BAC Information

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BAC

Clone NameMSMg01-268B14
Chromosome5 (Build37)
Map Location 116,801,425 - 116,802,083
singlet/doubletsinglet
Overlap genenone
Upstream geneMsi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
Downstream gene4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268B14.T7 (MSMg01no268_b14.b1)MSMg01-268B14.TJ (MSMg01no268_b14.g1)
ACCAG408634AG408635
length731731
length of high quality
(start - end)
659 (73 - 731)---
definitionCHROMAT_FILE: MSMg01no268_b14.b1 PHD_FILE: MSMg01no268_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:19 2005CHROMAT_FILE: MSMg01no268_b14.g1 PHD_FILE: MSMg01no268_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCCAAAGAAATCACTATTGTTAAGAGGAAGTCCAGAGCAATCTGCAG
ATTTTTTTAACCCCTTCCTGGCACAATCACACGTAATGGCAACATATTTA
ATTGTTCATTTAATAATGCCCTCTCCTCACCCAGCAGACCATAGACTCCT
CCAGGTGAGGACCGTGCCTTTCCCGTGTTCACAACACCCAGCGCAGTGTC
TGGCTAGACACCATCTCCTCAATAATTAGAGCCAGATGGCCTGAGTTTAG
CTCCAGGTTTCTCTTCTTGCTGGCTGTCTTTTGAGCAAGTGACAAGTTTT
CTGGCCTTTATTTGCTTCAACTATAAAGTGGGGACTGCAGTTCTCTGCAA
AGAGTTCCCGGGGATTGTTGAATACGGTGTTCTGTCTCGATCCTGAAACT
TGCTGGCTGCGTTGAAGGCTCAGCTGTCAATACCACCATAGAGATCATTT
CAATTTAATTAATAGACACTTTTCTGCCGCAGGAAGCAGGATCCTGGATG
GATCTGTTTCTGTCTTTGTCTCTGGAATTATTAGTAGAAAAATTTGAGTT
TGTAGAGAAGCTGGCAGCTCATCTGAGCAGAAAAATACAAGGCAACTGAT
TTTTTGCAAGAGACTTGTGGGACTCCTGGGTCACTGAACAGCCTTTCTCT
CTCATCTGAAAAGGCCAGTCAGGTGATGGAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCACTCAAGGACCTGAGCCCAAA
TCACCCTGGGTGCAATGGCTGTCTGCCTTGTTCCTCCAGCATCTCATAGA
GGGCAGGCAACTTCTTCGGAGCCACACAGCAATTACAAGGGCTTGTGCTG
CTGCGGACCCACTCCTCGGTGTGACTCTAGGCGACCTTTCTTTTGAGAGT
CTGAAGGCATAACAAGGGGCCAGTAAACGTCTGTGAACCAAACAGGCAAC
ATTCAGGCCCTTAAGAAACTTATATTCATCGAGGGGCACGGAGAGGGTCA
ACAGGGACCACTTTTATGTCGGCGTCCGCACCGCGAGTTAGGAAAAACTG
CCTGGGGGTGTTGGGGGTCGGCAGCGAGGGAATGGGCAGGAGGAAACTGC
TCCTCACGCATGATTGCCGAGTTTACCTAACACTGTCAGGATGACCGGGT
GACTCAGAACAGGGGATCTACTCAACTGGATGGGTGAAGTCAGACAACCG
CTGGGGCAGCTCCAGCATCAGGAACAGCACGTGCAAAGGCCCTGACACAA
TAATATCGTGTCTCTATTCACATACGTTATACAGCAAAGAGACCAAGAGA
GACGGTACTGAGCTTAGACACAGGAGGTCCAGTTCAGTCCCCGCCCCAAC
GGCTCAGACTGTGGTCACTGCGGTTGACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_b14.b1 MSMg01no268_b14.b1 CHROMAT_FILE:
MSMg01no268_b14.b1 PHD_FILE: MSMg01no268_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:19 2005
         (659 letters)



>mm_chr5_116801225_116802283
          Length = 1059

 Score = 1207 bits (624), Expect = 0.0
 Identities = 651/660 (98%), Gaps = 2/660 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaagaggaagtccagagcaatctgcagatttttttaaccccttcctggca-caatcaca 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 201 ttaagaggaagtccagagcaatctgcagatttttttaaccccttcctggcaaca-tcaca 259

                                                                       
Query: 60  cgtaatggcaacatatttaattgttcatttaataatgccctctcctcacccagcagacca 119
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cataatggcaacgtatttaattgttcatttaataatgccctctcctcacccagcagacca 319

                                                                       
Query: 120 tagactcctccaggtgaggaccgtgcctttcccgtgttcacaacacccagcgcagtgtct 179
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tagactccttcaggtgaggaccgtgcctttcccgtgttcacaacacccagcgcagtgtct 379

                                                                       
Query: 180 ggctagacaccatctcctcaataattagagccagatggcctgagtttagctccaggtttc 239
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggctagacactatctcctcaataattagagccagatggcctgagtttagctccaggtttc 439

                                                                       
Query: 240 tcttcttgctggctgtcttttgagcaagtgacaagttttctggcctttatttgcttcaac 299
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 tcttcttgctggctgtcttttgagcaagcgacaagttttctggcctttatttgcttcaac 499

                                                                       
Query: 300 tataaagtggggactgcagttctctgcaaagagttcccggggattgttgaatacggtgtt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tataaagtggggactgcagttctctgcaaagagttcccggggattgttgaatacggtgtt 559

                                                                       
Query: 360 ctgtctcgatcctgaaacttgctggctgcgttgaaggctcagctgtcaataccaccatag 419
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 ctgtctcgatcctgaaacttgctggctgcgtcgaaggctcagctgtcaataccaccatag 619

                                                                       
Query: 420 agatcatttcaatttaattaatagacacttttctgccgcaggaagcaggatcctggatgg 479
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 620 agatcatttcaatttaattaatagacacttttctgccacaggaagcaggatcctggatgg 679

                                                                       
Query: 480 atctgtttctgtctttgtctctggaattattagtagaaaaatttgagtttgtagagaagc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atctgtttctgtctttgtctctggaattattagtagaaaaatttgagtttgtagagaagc 739

                                                                       
Query: 540 tggcagctcatctgagcagaaaaatacaaggcaactgattttttgcaagagacttgtggg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tggcagctcatctgagcagaaaaatacaaggcaactgattttttgcaagagacttgtggg 799

                                                                       
Query: 600 actcctgggtcactgaacagcctttctctctcatctgaaaaggccagtcaggtgatggag 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 actcctgggtcactgaacagcctttctctctcatctgaaaaggccagtcaggtgatggag 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)