Query= MSMg01no268_d02.b1 MSMg01no268_d02.b1 CHROMAT_FILE:
MSMg01no268_d02.b1 PHD_FILE: MSMg01no268_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:26 2005
(184 letters)
>mm_chr5_124978787_124979370
Length = 584
Score = 327 bits (169), Expect = 3e-94
Identities = 181/185 (97%), Gaps = 2/185 (1%)
Strand = Plus / Plus
Query: 1 atggccccggcccagccacaacagaaataaagcacagggaggggacacgaaatagtgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggccccggcccagccacaacagaaataaagcacagggaggggacacgaaatagtgcca 260
Query: 61 gcg-ggacttctggcagacaccaggccgagtccgtggtaggatggatcctggattcaaca 119
| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 g-gaggacttctggcagacaccaggccgagcccgtggtaggatggatcctggattcaaca 319
Query: 120 tgggcggactgtgaggccctccctcccggaggccctctaggggaggtgaatatgggggtg 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgggaggactgtgaggccctccctcccggaggccctctaggggaggtgaatatgggggtg 379
Query: 180 ggggt 184
|||||
Sbjct: 380 ggggt 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space: 101376
Effective search space used: 101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no268_d02.g1 MSMg01no268_d02.g1 CHROMAT_FILE:
MSMg01no268_d02.g1 PHD_FILE: MSMg01no268_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:26 2005
(662 letters)
>mm_chr5_125068797_125069853
Length = 1057
Score = 1234 bits (638), Expect = 0.0
Identities = 654/662 (98%), Gaps = 5/662 (0%)
Strand = Plus / Minus
Query: 1 ctggaccaggcgctgggggcttcctgtaagccggatgttgctgcttcaggcaggtgtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctggaccaggcgctgggggcttcctgtaagccggatgttgctgcttcaggcaggtgtggg 615
Query: 61 caactcctactgccatgctgggtgccctctgttcagagggagctgttttggctccaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 caactcctactgccatgctgggtgccctctgttcagagggagctgttttggctccaagga 555
Query: 121 atagcatgatgggctatggccatagacagcacaaccctgcctgaaaagctcttacaaata 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 554 atagcatgatgggctatggccacagacagcacaaccctgcctgaaaagctcttacaaata 495
Query: 181 cccagcactttaggtacaacacgcaaggcatccttgaaaaaggggggacgggggggacgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 494 cccagcactttaggtacaacacgcaaggcatccttgaaaaaggggggacgggg-----gg 440
Query: 241 ggggggaacgtcctggaaacacaaaaagccgcccctccccacacaccataagccataaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 ggggggaacgtcctggaaacacaaaaagccgcccctccccacacaccataagccagaaaa 380
Query: 301 tgtttctaactccaggctatgggggcagaacacttttagcaagtcacaaccacctcacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtttctaactccaggctatgggggcagaacacttttagcaagtcacaaccacctcacct 320
Query: 361 ggctgccagaggtgcagtgtgctgacgttcatcccagcggtatgcagggctcggaccggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggctgccagaggtgcagtgtgctgacgttcatcccagcggtatgcagggctcggaccggc 260
Query: 421 ttgccaagctggtaacctagacacggacaacaaagcagcgagggctgccatcttccctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttgccaagctggtaacctagacacggacaacaaagcagcgagggctgccatcttccctct 200
Query: 481 ggggtgcttggaaggtgtttggcccagggagtgacactgttaggaggtgtggccttgttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggggtgcttggaaggtgtttggcccagggagtgacactgttaggaggtgtggccttgttg 140
Query: 541 gaggaagcttgtcactgtgggggtggcttggagaccctcctcctaactgcctggaagcca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gaggaagcttgtcactgtgggggtggcttggagaccctcctcctaactgcctggaagcca 80
Query: 601 gtcttctcctgactgccttgggtgtcgaattcatggctcgttctccagcaccatgtctgc 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 79 gtcttctcctgactgccttgggtgtcgaattcatggctccttctccagcaccatgtctgc 20
Query: 661 ct 662
||
Sbjct: 19 ct 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1057
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1047
Effective search space: 682644
Effective search space used: 682644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
