BAC Information

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BAC

Clone NameMSMg01-268G22
Chromosome5 (Build37)
Map Location 144,381,671 - 144,381,987
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik
Downstream genePscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268G22.T7 (MSMg01no268_g22.b1)MSMg01-268G22.TJ (MSMg01no268_g22.g1)
ACCAG408861AG408862
length725719
length of high quality
(start - end)
323 (45 - 367)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no268_g22.b1 PHD_FILE: MSMg01no268_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:42 2005CHROMAT_FILE: MSMg01no268_g22.g1 PHD_FILE: MSMg01no268_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATTTCCCGTGGGCACAGCCCAGGGCTGGGCAGACAGACTCAGTAC
GCCCCTGTTCCAAATCTATGGCTCGATTTTCTCATTCCGTATGTCTCGTT
TCCAGTAACTTCTCCTTAACGTTGCATGTGTGCCCTCCCAAGCCTTTCTG
CTCGAATTAAATTGCATTAAAGAAAAGCAAACATTATAAGGGAGGAGATG
GCTCATCTGTAATAAAATTTTCCAGCAACTGTTTTATATTTACAAATTGC
CCATTGAATCAAAGGATACTTCCTCCACCGTCCATCTATCAAAGCAGACA
GCCTTCACCTTTTTGTTCTTTTGTTACCCACCGCCTTCAAAGAGTCCAAT
TTCCTGATAACCTCAAGAATTATAACCCCGGATATTCTGTTGCCTCCTAG
ACTGTAAGATAGGCTTCTGCGAGTTGATGAGATGTTTAGCAGCTTGTACA
AATCCATAGAGAAGTGATCTGAGAGTCAAGTGATGTAGATTCAAGTCCTG
ATGAACAAAACTGTGGCTTCCTGATCCTGTCCATTTTGTTATCTCAAGAT
AACAGCATCTGAGGAAAAAAAAAAAAAAACGATAGCACTCTTTGAAGAGG
ATAATGTCCTAGGGTGGAGCTTTGAACTCAGACTCATCAATTATAAATGC
TTTTCAATATTAATTCCTGGGCTGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGGGAGAATGAATAGAAGGAAAGATA
ACTAAAGCACAGGCCATCTTTAGGTCAATTCGATCTATATGGTCATTTTG
TAATCTCTTTTTTATTAGAGCCAATTCCTTTTCAGGTTCAGCTGATAATC
TTCTTGGACTATTTAATTCTTTATCACTTTGCAGAGTTTGAAATAAATTA
CTCGACTCTTCAATGGTCAAACCAATTGTAAGCTGAAGCCAGTTAATATC
TCCCCATAATTTTTGAAAATCATTAAGAGTATTTAACTGGTCTCTCCTGA
TTTCCACCTTTNGTANCTTACTCTCTCGCCCCCTATCTTATATTCTAGGT
AATTAACAGAATTGCCTCTTTGTTTTTCAAAGAAAATTTGTAATCCTCAG
ACAAAGCAAAAAAAAATTGTTTTTTAATCTTCATCAAACATTTGTTCTGA
GGTGTATCTATTAGAATCACCCAGCAAAATATCATCCATATAATGGTAAA
TTATGGCTTGAGGGAATTGCTTACAGATTATTTCCAATGGCTGATGTTGT
AAGGTGGCAGGACTTTCTGTTGGTACCTTTTGGTTGGTTAAATGTGGGAA
CCATGAAGGCAGTTCTCTATCTTGCTCTTGTAAAGGAGTTGTGGAAAAAA
AACCGATCCTTTAGCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_g22.b1 MSMg01no268_g22.b1 CHROMAT_FILE:
MSMg01no268_g22.b1 PHD_FILE: MSMg01no268_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:42 2005
         (323 letters)



>mm_chr5_144381467_144382189
          Length = 723

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatttcccgtgggcacagcccagggctgggcagacagactcagtacgcccctgt 64
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 521 gaattcaatttcccgtgggcacagcccagggctgggcagacggactcagtactcccctgt 462

                                                                       
Query: 65  tccaaatctatggctcgattttctcattccgtatgtctcgtttccagtaacttctcctta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tccaaatctatggctcgattttctcattccgtatgtctcgtttccagtaacttctcctta 402

                                                                       
Query: 125 acgttgcatgtgtgccctcccaagcctttctgctcgaattaaattgcattaaagaaaagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acgttgcatgtgtgccctcccaagcctttctgctcgaattaaattgcattaaagaaaagc 342

                                                                       
Query: 185 aaacattataagggaggagatggctcatctgtaataaaattttccagcaactgttttata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaacattataagggaggagatggctcatctgtaataaaattttccagcaactgttttata 282

                                                                       
Query: 245 tttacaaattgcccattgaatcaaaggatacttcctccaccgtccatctatcaaagcaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tttacaaattgcccattgaatcaaaggatacttcctccaccgtccatctatcaaagcaga 222

                            
Query: 305 cagccttcacctttttg 321
           |||||||||||||||||
Sbjct: 221 cagccttcacctttttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)