BAC Information

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BAC

Clone NameMSMg01-268H13
Chromosome5 (Build37)
Map Location 115,647,445 - 115,647,736
singlet/doubletsinglet
Overlap genenone
Upstream geneAcacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1
Downstream genePop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268H13.T7 (MSMg01no268_h13.b1)MSMg01-268H13.TJ (MSMg01no268_h13.g1)
ACCAG408886AG408887
length712716
length of high quality
(start - end)
310 (45 - 354)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no268_h13.b1 PHD_FILE: MSMg01no268_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:45 2005CHROMAT_FILE: MSMg01no268_h13.g1 PHD_FILE: MSMg01no268_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTGCCCTTCAATGTCACTTCTCTCTGCAGCCTTCTCTGGCTCCC
TGAAGGTTTTCTTTTGGGCTTCCACAGAACCCAGCCTGTAATCCTCTAAT
TGCCTGGTTCCCTTATATTACTACAGTAGTCTTTCTCCTCGATTTGAGAT
ATGGGATATCTTAAATGTATATATATATCCCTGAAGAACAAAGAATGGGT
CTTACATCTTGTTTGTCTGCCTTTGAGTCAGGGTTTCTCTTAACTCAGGC
TGGTCTTGAACTCTATGTGTCCAAGGATGACCTTGAACCCCAGGTCCTCC
AAGGTCATCATTTAGACCCCCCCCCCCCTTGGGGTACCTGCCACCCTGCC
TGGCTGGACCTTACCACCCATTCAAAATTATGTTTTGTTTTTTTGGTTTG
TTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGAAACTC
ACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCC
TCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCAGCTACCATTC
ATTCTTTTGTCTTGAGACGGGGAGGCAGGGTTTCTCTGTATAGCCCTGGC
TGTCCTGGAACTCACTTTGGAGACCAGGCTGGCCTCGAACTCAGAAATCC
ACCTGCCTCTGC
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTGCTTTTAATACATTTAAAAT
TTGTGTGAAGGCTGGAGAGGTGCTTCAGAGGTTAAGAGCACCTGTTGCTT
TCATTGAGGATCTGTGTTTAGTTCCCAGCACCCATCTGGTAGTTCACAGT
GACCTATAACACCAGTTCCAAGGGATTCGACACTCTCTTCTGATCTCCAG
CATCACCAAGCACACACATAGTGTGTATACATACATAGAGATAAAACACC
GATACGCATGTTATAAATCCTTAAAAAACACATTTGAGGCATGCATATTT
AACAGCTTGATTTTTTTATTTCGCCCCCCCCCACCATTCAGTTATCTAAT
AATTTAGAGTATCAGATTGACGCTGAGATACTAGAACACTGTCTTAAGCA
CTCTTCATACAACAATATGCAAGTCATCGTAACCTTTGCTCTCCTGAAAC
TTAGCCGATGCTGCAGTGGAGAGACATTGAGGCATAGGCAGATACAAACA
GAATAACTAATGACTCCTCAGAAGATAATGAACAGTGTGATAGAGTGGCT
TTGTGGGAAATGATGTCTGGGTAAAAAGAAGGATTTAGAGGAATCGATAT
TTTATGCAGGAGGAATAGTTCTAATGTAGAATTATGTGATAGTGATAGGA
AACATTCTGTCAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_h13.b1 MSMg01no268_h13.b1 CHROMAT_FILE:
MSMg01no268_h13.b1 PHD_FILE: MSMg01no268_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:45 2005
         (310 letters)



>mm_chr5_115647326_115648029
          Length = 704

 Score =  482 bits (249), Expect = e-140
 Identities = 284/299 (94%), Gaps = 8/299 (2%)
 Strand = Plus / Minus

                                                                       
Query: 13  ttgcccttc-aatgtcacttctctctgcagccttctctggctccctgaaggttttctttt 71
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 411 ttgcccttcaaatgtcacttctctctgcagccttctctggctccctgaaggttctctttt 352

                                                                       
Query: 72  gggcttccacagaacccagcctgtaatcctctaattgcctggttcccttatattactaca 131
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 351 gggcttccacagaacccagcctgtaattctctaattgcctggttcccttatattactacg 292

                                                                       
Query: 132 gtagtctttctcctcgatttgagatatgggatatcttaaatgtatatatatatccctgaa 191
           |||||||||||||||||||||||||||    ||   || || ||||||||||||||||||
Sbjct: 291 gtagtctttctcctcgatttgagatat----ta---tatatatatatatatatccctgaa 239

                                                                       
Query: 192 gaacaaagaatgggtcttacatcttgtttgtctgcctttgagtcagggtttctcttaact 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaacaaagaatgggtcttacatcttgtttgtctgcctttgagtcagggtttctcttaact 179

                                                                      
Query: 252 caggctggtcttgaactctatgtgtccaaggatgaccttgaaccccaggtcctccaagg 310
           |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 178 caggctggtcttgaactctatgtggccaaggatgaccttgatccccaggtcctccaagg 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 704
Length adjustment: 9
Effective length of query: 301
Effective length of database: 695
Effective search space:   209195
Effective search space used:   209195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)