TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAACTATTACCAGATATAAGAAGTTTTTGGTAAATAATTGTACT
GTATATTTTTTCCACATTTCTATCGAGTTCAGAGTAAGAGGGAATTTGGC
ATGAGTTAGTTCAAGTTGCTCAGCCCAAGCGGAGATACTGAAGACCAAGG
AAGCCAAGGACTTACTTAATCCTTGGTCATATGTTAAATAAACCAAAAGT
CACCAAAAATCTCTAGCATTAAAGAAAATCATTAGTAATCTAGCATAATA
TCAATTCCAATCACCTTACTCATTGAGAAAAAACATTGTCTTATGTATGT
AGAATAACTTTTGCTAGCTTAGCAGCACTTTTTTAACTACTAAAATCTTT
AAACCAATTATAAGATGGTGAAATTAAGTGGGGGAGGAGGGAATATCTAG
GACTTTAATTCCAGAAACAAGGCACAGTCCGGCTCAGTAGGGCACATATG
GATCTGCTGAAAACATTTGACAATTTGAACACATTTTCAGTGTTTCTTTT
TATTTAGCCTAGAATTCTCCTAGATCTGGCTCTGATTAAAGAAGGCATGT
AGAGGGGCATCTGGAGAGTCCAATTCAGAAATGAGAAGCACAATTCTGTC
TGCACTAATTCGGTTTTCTGTGTTAGATCTAATGAAGCTCCAATTATGAG
TATAAGGAGGATTGAGCAAACAGCGACGCTAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCTTCTTCATATTCCATCTG
TTATCCACATACATGTTCATTTTTGCGACAGTCACTGTTCTAGTGATAAG
TTAGTTCTATGAGTCAATGATTTTGACCACCTCTACCCCAGGCCAGTAGA
GAGAAGAAAGGAAATAATCAGACAATTTAAAATTTGAGGATATATGTAAA
TTTACATGCCTCCTTTGACATATGTAAATGGAATTCTGATCTCCCTCATT
TATTTATTACATGTAAATGAGTATATTGTAGCTGTCTTTGGACATACCAG
AAGAGAGCACGGATCNCTTTTTTGACGCCCCCCCCCCACCATGTGGTTGC
TGGGAATTGAACTCAGGACCTCTGGAAGAGCAAACAGAACTCCTAACCAC
TGAGCCATCTCTCCAGCCCCGAAAGATCTCCTTTTGAATTTGAGGATAAA
GAATCTCTATAGGAAAGCTATTAGCATTAATGTGTACCTATCACAAAATG
ACACTAACTCATTACAACAAAATATGAAAGACAAGATATGTTTTTATAAC
TACTTTGTAATGAGAAAAGTTGGGGTTCCGGAAATTTTTCCAGTGGCCAA
ATTAAGGATAAAATTCAAGCCGCTGGATGCTGAGACATAACTTCCTATGT
TACTAAACCATCTCTTATGAAAAGTGCTCA

Query= MSMg01no268_l04.b1 MSMg01no268_l04.b1 CHROMAT_FILE:
MSMg01no268_l04.b1 PHD_FILE: MSMg01no268_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:01 2005
         (587 letters)



>mm_chr5_97961157_97962143
          Length = 987

 Score = 1112 bits (575), Expect = 0.0
 Identities = 584/587 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcagagtaagagggaatttggcatgagttagttcaagttgctcagcccaagcggagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 787 gttcagagtaagagggaatttggcatgagttagttcaagttgctcagcccaagtggagat 728

                                                                       
Query: 61  actgaagaccaaggaagccaaggacttacttaatccttggtcatatgttaaataaaccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 actgaagaccaaggaagccaaggacttacttaatccttggtcatatgttaaataaaccaa 668

                                                                       
Query: 121 aagtcaccaaaaatctctagcattaaagaaaatcattagtaatctagcataatatcaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aagtcaccaaaaatctctagcattaaagaaaatcattagtaatctagcataatatcaatt 608

                                                                       
Query: 181 ccaatcaccttactcattgagaaaaaacattgtcttatgtatgtagaataacttttgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ccaatcaccttactcattgagaaaaaacattgtcttatgtatgtagaataacttttgcta 548

                                                                       
Query: 241 gcttagcagcacttttttaactactaaaatctttaaaccaattataagatggtgaaatta 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gcttagcagcatttttttaactactaaaatctttaaaccaattataagatggtgaaatta 488

                                                                       
Query: 301 agtgggggaggagggaatatctaggactttaattccagaaacaaggcacagtccggctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtgggggaggagggaatatctaggactttaattccagaaacaaggcacagtccggctca 428

                                                                       
Query: 361 gtagggcacatatggatctgctgaaaacatttgacaatttgaacacattttcagtgtttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtagggcacatatggatctgctgaaaacatttgacaatttgaacacattttcagtgtttc 368

                                                                       
Query: 421 tttttatttagcctagaattctcctagatctggctctgattaaagaaggcatgtagaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttttatttagcctagaattctcctagatctggctctgattaaagaaggcatgtagaggg 308

                                                                       
Query: 481 gcatctggagagtccaattcagaaatgagaagcacaattctgtctgcactaattcggttt 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 307 gcatctggagagtccaattcagaaatgagaagcacaattctctctgcactaattcggttt 248

                                                          
Query: 541 tctgtgttagatctaatgaagctccaattatgagtataaggaggatt 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctgtgttagatctaatgaagctccaattatgagtataaggaggatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no268_l04.g1 MSMg01no268_l04.g1 CHROMAT_FILE:
MSMg01no268_l04.g1 PHD_FILE: MSMg01no268_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:02 2005
         (292 letters)



>mm_chr5_97808326_97809017
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcctaaccactgagccatctctccagccccgaaagatctccttttgaatttgaggata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcctaaccactgagccatctctccagccccgaaagatctccttttgaatttgaggata 260

                                                                       
Query: 61  aagaatctctataggaaagctattagcattaatgtgtacctatcacaaaatgacactaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaatctctataggaaagctattagcattaatgtgtacctatcacaaaatgacactaac 320

                                                                       
Query: 121 tcattacaacaaaatatgaaagacaagatatgtttttataactactttgtaatgagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattacaacaaaatatgaaagacaagatatgtttttataactactttgtaatgagaaaa 380

                                                                       
Query: 181 gttggggttccggaaatttttccagtggccaaattaaggataaaattcaagccgctggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttggggttccggaaatttttccagtggccaaattaaggataaaattcaagccgctggat 440

                                                               
Query: 241 gctgagacataacttcctatgttactaaaccatctcttatgaaaagtgctca 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgagacataacttcctatgttactaaaccatctcttatgaaaagtgctca 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)