Query= MSMg01no268_m01.b1 MSMg01no268_m01.b1 CHROMAT_FILE:
MSMg01no268_m01.b1 PHD_FILE: MSMg01no268_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:05 2005
(650 letters)
>mm_chr5_33685630_33686679
Length = 1050
Score = 1226 bits (634), Expect = 0.0
Identities = 643/646 (99%)
Strand = Plus / Plus
Query: 5 gaattctgcattagcccagtagttgctcacttctgggggccctggaggctcacttggagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcattagcccagtagttgctcacttctgggggccctggaggctcacttggagg 264
Query: 65 gtcccttgcatccaagagctgtttcatgtattgctcttttcattcaccttaagctcctat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcccttgcatccaagagctgtttcatgtattgctcttttcattcaccttaagctcctat 324
Query: 125 gcttgtgccataccccatgggctatgttcatggcttgcttttcatttgtgacctgtttgc 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcttgtgccataccccatgggctgtgttcatggcttgcttttcatttgtgacctgtttgc 384
Query: 185 ctatactcattgccttgttccagtgacttagaaataagtcatctgttctctacccctgct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctatactcattgccttgttccagtgacttagaaataagtcatctgttctctacccctgct 444
Query: 245 catcttcatccctcacagttaaaagatgtgcaaataatggctgccagttatccagtgaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catcttcatccctcacagttaaaagatgtgcaaataatggctgccagttatccagtgaac 504
Query: 305 aaagtgtcccgttctctctcctccttccctccctctccctgagaactgtctttagaatag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagtgtcccgttctctctcctccttccctccctctccctgagaactgtctttagaatag 564
Query: 365 cctcacttctgttcttgctcacattgtccatggtcatgctgttgctagggccactgggca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctcacttctgttcttgctcacattgtccatggtcatgctgttgctagggccactgggca 624
Query: 425 accttatagggctgctcagatcctttgaccacatgtccattcacagcaacctgctaacag 484
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accttatagggctgctcagaccctttgaccacatgtccattcacagcaacctgctaacag 684
Query: 485 gtatcctggtgttcatcttgaccttttcaagctagtgacttctctgtagtcttgaggtac 544
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 gtatcctggtgttcatcttgaccttttcaggctagtgacttctctgtagtcttgaggtac 744
Query: 545 attcctgtttggcttccacagtagttatttgcctggcttccccaggctcacagccaactc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attcctgtttggcttccacagtagttatttgcctggcttccccaggctcacagccaactc 804
Query: 605 tcattcttcattattgaactatctgcagaatactggaacagcaccc 650
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcattcttcattattgaactatctgcagaatactggaacagcaccc 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no268_m01.g1 MSMg01no268_m01.g1 CHROMAT_FILE:
MSMg01no268_m01.g1 PHD_FILE: MSMg01no268_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:05 2005
(620 letters)
>mm_chr5_33853087_33854106
Length = 1020
Score = 1083 bits (560), Expect = 0.0
Identities = 597/620 (96%), Gaps = 17/620 (2%)
Strand = Plus / Minus
Query: 1 cttcctttccagacaaaggggagaagggatggacattcctcagcctcatgggtcagctcc 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 966 cttcctttccagacaaaggggagaagggatggatgttcctcagcctcatgggtcagctcc 907
Query: 61 gaatcccaggtccaagatacccactgtgggtctctatgccatgtgcagagacttgaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaatcccaggtccaagatacccactgtgggtctctatgccatgtgcagagacttgaaaga 847
Query: 121 gggcctatcaagggcagggctggggcaggggaggggtgactctctgaggccaggcccggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gggcctatcaagggcagggctggggcaggggaggggtgactctctgaggccaggcccggt 787
Query: 181 ggccagtccctggcaggccatatccggaccctttcccaggcacggtcctttcccaggcac 240
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 786 ggccagtccctggcaggccatatccggac-----------------cctttcccaggcac 744
Query: 241 ggtcctttcccaggcacggtagtgtcttgctgtgtggagccccaccttcgctcagcccct 300
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct: 743 ggtcctttcccaggcacggtagtgtcttgctgtgtggagccccacttttgctcagccctt 684
Query: 301 cactcgctggcctaacccctgctgctcatagccattgggtctgtaagttctcatgctgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cactcgctggcctaacccctgctgctcatagccattgggtctgtaagttctcatgctgga 624
Query: 361 cttgtgtcctgaaaagtgcctcactagccaagagcacacagtgccaccgatgactctgga 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 623 cttgtgtcctgaaaagtgcctcactagccaagagcacacagtgccacccatgactctgga 564
Query: 421 cacacatgtgagcaggtagtagtctggccagccttggctccagactcaaatgtcagatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cacacatgtgagcaggtagtagtctggccagccttggctccagactcaaatgtcagatca 504
Query: 481 aatgtcaggtcagagactgcctttcttagccctctgagtgcctcaatgtgtcatcggagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aatgtcaggtcagagactgcctttcttagccctctgagtgcctcaatgtgtcatcggagg 444
Query: 541 cagccacccaccctaaagtgatctggccactcaccacaccattctgggcctcagtttccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagccacccaccctaaagtgatctggccactcaccacaccattctgggcctcagtttccc 384
Query: 601 cactggtaaagagaatagac 620
||||||||||||||||||||
Sbjct: 383 cactggtaaagagaatagac 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
