BAC Information

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BAC

Clone NameMSMg01-268N19
Chromosome5 (Build37)
Map Location 85,112,124 - 85,112,450
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268N19.T7 (MSMg01no268_n19.b1)MSMg01-268N19.TJ (MSMg01no268_n19.g1)
ACCAG409151AG409152
length741745
length of high quality
(start - end)
332 (46 - 377)305 (76 - 380)
definitionCHROMAT_FILE: MSMg01no268_n19.b1 PHD_FILE: MSMg01no268_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:13 2005CHROMAT_FILE: MSMg01no268_n19.g1 PHD_FILE: MSMg01no268_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCAATAACAGTGGTGGGTTTTGGGAACTGCCTGGGACTGTC
TCCTGGGAACCATAAGACACTGACAAAACAAGGCTCCTTCCATGTTGTGT
CAGGCATCTGAATGATGCTCTTATTCAGGACTGACATTTGGGTGATTAAC
TGCATTTTGCACTTTAGAATTTGTTCTTTCTTGTCATGTTCTCATCGGAG
TCATAAACAAGAAGCACCTTGACTCTGATACACAGTATTCCAGTTTTAAC
ACCTATTTAAGATGTTATTCTTCATCATACTTGACTCTATCTGACACATT
AAAATATCTCTCCTAATATCTTCTTTCACCGCCGATTGAGAAGTTTATCA
TCACTATTTTTAAAAGCAAATTCTCCTCTCTCTCATTTTCTCTCTCTGTC
TCTGCCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCACTGTCTCTG
TCTCTGTCTCTCTCTCTTTTCTTCTCTATTCCAACTTCTCCCCTTCTTTG
GTTATCTTAAAAGTAACAAACGATAAATTACAAATATTGATAAACTCTTC
ACCTATGTATTCATCTCTTTCTCTCATGCATTTACATATTGACAAGTACA
CACACACACACACACACACACACACACACACACACACGCACGCACAATTA
TATGCTATTATTAATGAGTGGTCACTAAAAATGAGAATTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAA
AGCAATCTACAGCAAACCAGCAGCCAACATCAAAGTAAATGGAGAGAAGC
TGGAAGAAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCT
CCCTACCTTTTCAACATAGTACTTGAAGAATTAGCCAGAGCAATTCGACA
ACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATAT
CACTTTTTGCAGATGATATGATACTATATATATAAGTGACCCTAAAAATT
CTACCAGAGAACTCCTAATTCTGATAAACACCTTCGCCGAAGTAGCTGGA
TATAAAATAAACTCAAACAAGTAAATGGCCTTTCTCTATACAAAGAATAA
ACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAA
ATAATATAAAATATCTTGGCGTGACTCTAACTAAAAAAGTGAAAGATCTA
TATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAG
AAGATGGAAAGATCTCCCATGCTCAAGGATTGGCAGGATCAACATTGTAA
AAATGGCTATCTTGCCAAAACCAATCTACAGGTTCAATGCAATCACCATC
AAAATTCCAACTCAATTCTTCAATGAATTAGAAGGAGCAATTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_n19.b1 MSMg01no268_n19.b1 CHROMAT_FILE:
MSMg01no268_n19.b1 PHD_FILE: MSMg01no268_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:13 2005
         (332 letters)



>mm_chr5_85111920_85112651
          Length = 732

 Score =  617 bits (319), Expect = 0.0
 Identities = 325/327 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggccaataacagtggtgggttttgggaactgcctgggactgtctcctgggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggccaataacagtggtgggttttgggaactgcctgggactgtctcctgggaa 264

                                                                       
Query: 65  ccataagacactgacaaaacaaggctccttccatgttgtgtcaggcatctgaatgatgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccataagacactgacaaaacaaggctccttccatgttgtgtcaggcatctgaatgatgct 324

                                                                       
Query: 125 cttattcaggactgacatttgggtgattaactgcattttgcactttagaatttgttcttt 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 cttattcaggactgacatttgggtgattaactgcattttgcactctagaatttgttcttt 384

                                                                       
Query: 185 cttgtcatgttctcatcggagtcataaacaagaagcaccttgactctgatacacagtatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgtcatgttctcatcggagtcataaacaagaagcaccttgactctgatacacagtatt 444

                                                                       
Query: 245 ccagttttaacacctatttaagatgttattcttcatcatacttgactctatctgacacat 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagttttaacacctgtttaagatgttattcttcatcatacttgactctatctgacacat 504

                                      
Query: 305 taaaatatctctcctaatatcttcttt 331
           |||||||||||||||||||||||||||
Sbjct: 505 taaaatatctctcctaatatcttcttt 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)