Query= MSMg01no268_o03.b1 MSMg01no268_o03.b1 CHROMAT_FILE:
MSMg01no268_o03.b1 PHD_FILE: MSMg01no268_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:14 2005
(243 letters)
>mm_chr5_143660053_143660695
Length = 643
Score = 439 bits (227), Expect = e-128
Identities = 236/239 (98%)
Strand = Plus / Minus
Query: 5 gaattcaaaataatctactgagacttggcagagaactcactcagacaccagattctcagc 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gaatttaaaataatctactgagacttggcagagaactcactcagacaccagattctcagc 291
Query: 65 acaaagattttctaccctgaaggcacggtggggtagtaaatctggactggacaaagaaaa 124
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 acaaagattcactaccctgaaggcacggtggggtagtaaatctggactggacaaagaaaa 231
Query: 125 gtgactttttaaggagaaaaggtcttggctggggtgaggtgggaagtcctgattagatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gtgactttttaaggagaaaaggtcttggctggggtgaggtgggaagtcctgattagatat 171
Query: 185 tctagtcactgtaaccaaagaatgaattttgattgctggaccttggtgttttgatagtt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tctagtcactgtaaccaaagaatgaattttgattgctggaccttggtgttttgatagtt 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no268_o03.g1 MSMg01no268_o03.g1 CHROMAT_FILE:
MSMg01no268_o03.g1 PHD_FILE: MSMg01no268_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:14 2005
(354 letters)
>mm_chr5_143813763_143814521
Length = 759
Score = 636 bits (329), Expect = 0.0
Identities = 350/359 (97%), Gaps = 5/359 (1%)
Strand = Plus / Minus
Query: 1 aagcttgggttttatttgaaaagaaaagagctccttgaagacta-aagccagtgattgtg 59
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 402 aagcttgggttttatttgaaaagaaaagagctccttgaagactaggagccagtgattgtg 343
Query: 60 gggccactgaggggcgtcgctgctctgccgatgctgctcgaggctccccaggcttctcca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gggccactgaggggcgtcgctgctctgccgatgctgctcgaggctccccaggcttctcca 283
Query: 120 ggctccctgtcctgtcctcccttcccctctgctccactccctcttt----tttctttctt 175
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 282 ggctccctgtcctctcctcccttcccctctgctccactccctcttttttctttctttctt 223
Query: 176 tttttaatctttcaaaatgtgtctttgtagccaaggatgaccttgaacttctgatcaggt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tttttaatctttcaaaatgtgtctttgtagccaaggatgaccttgaacttctgatcaggt 163
Query: 236 ggtggggtgaccctcgtgacctgcattattcagttcatgcagtcctgagaactccgcatc 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 162 ggtggggtgaccctcgtgacctgcattattcagttcatgcagtcctgagaactcggcatc 103
Query: 296 atgcacactagacaagcaccccactactggggtatattcccaaccccctttccttttcg 354
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 102 atgcacactagacaagcaccccactactgggctatattcccaaccccctttccttttcg 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 759
Length adjustment: 9
Effective length of query: 345
Effective length of database: 750
Effective search space: 258750
Effective search space used: 258750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
