Query= MSMg01no269_b24.b1 MSMg01no269_b24.b1 CHROMAT_FILE:
MSMg01no269_b24.b1 PHD_FILE: MSMg01no269_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:31 2005
(623 letters)
>mm_chr5_125453524_125454546
Length = 1023
Score = 1091 bits (564), Expect = 0.0
Identities = 604/620 (97%), Gaps = 8/620 (1%)
Strand = Plus / Plus
Query: 5 gaattctgctttatcccataaaccaactggaaatcacagacgatggctggtgaggccagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctttatcccataaaccaactggaaatcacagacgatggctggtgaggccagg 264
Query: 65 actt-ggactggagtgtatggggttaaagatgccttgggcaaccctctgtctgtgtatct 123
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actttgg-ctggagtgtatggggttaaagatgccttgggcaaccctctgtctgtgtatct 323
Query: 124 agctacaatctgcaaaacttaccatctaaatgacaaatgaaacccacactgtatgacaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctacaatctgcaaaacttaccatctaaatgacaaatgaaacccacactgtatgacaca 383
Query: 184 cacatctgcaaaggaaaaatgtagattggtgtctcccactggaagaaaaaataatgtgtg 243
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 cacatctgcaaaggaaaaatgtagattggtgtcttccactggaagaaaaaataatgtgtg 443
Query: 244 tgtgcatgtatgttgaggtcagacactgatgcttggtgtctttctcaatcacttgacaat 303
|| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 444 tg--catgtatgttgaggtcagacactgatgcttggtgtcttcctcaatcactcgacaat 501
Query: 304 ttaattttttgaggtccagtctctcactgaacctggagctcacagatttgactagactag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttaattttttgaggtccagtctctcactgaacctggagctcacagatttgactagactag 561
Query: 364 ctggcctggaacccccagggttctttctgtctctgcctctccagcactagggaggctagc 423
||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 562 ctggcctggaagccccagggttctttctgtcgctgcctctccagccctagggaggctagc 621
Query: 424 atgcacacacacacacacacacacacacacacacacacacacacacacacacacagggaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 622 atgcacacacacacacacacacacacacacacacacacacacacacacaca----gggta 677
Query: 484 gtttgggtagtacttaatcagttagttgccaaataaaacccatatgggggtgagtaatgc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtttgggtagtacttaatcagttagttgccaaataaaacccatatgggggtgagtaatgc 737
Query: 544 catatctagggtagtccctgccaccttagggcaagataattagaaggagaaagccaacta 603
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 catatctagggtggtccctgccaccttagggcaagataattagaaggagaaagccaacta 797
Query: 604 gaccccaagggtctctcagg 623
||||||||||||||||||||
Sbjct: 798 gaccccaagggtctctcagg 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_b24.g1 MSMg01no269_b24.g1 CHROMAT_FILE:
MSMg01no269_b24.g1 PHD_FILE: MSMg01no269_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:31 2005
(297 letters)
>mm_chr5_125627105_125627801
Length = 697
Score = 559 bits (289), Expect = e-164
Identities = 297/301 (98%), Gaps = 4/301 (1%)
Strand = Plus / Minus
Query: 1 tttaacacctttcttcccctgcagggagaggtggctaagggtggtagtcgaggtgtgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tttaacacctttcttcccctgcagggagaggtggctaagggtggtagtcgaggtgtgttt 373
Query: 61 agggtgtcccagactcaggaagccaggcagtgagcttaggcccggggttggggttgagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agggtgtcccagactcaggaagccaggcagtgagcttaggcccggggttggggttgagca 313
Query: 121 cactgccagacgctccgagcaaaggtagctggacagcagcatttacgtgatgtgtctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cactgccagacgctccgagcaaaggtagctggacagcagcatttacgtgatgtgtctgaa 253
Query: 181 gtcagaaaactgcagccatgtgggccagagccttcttgttggggtaagctgtctc---tt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 252 gtcagaaaactgcagccatgtgggccagagccttcttgttggggtaagctgtctcctctt 193
Query: 238 cttcctcttcctcctcctcctccttttt-aaaaaaaaaatatgacctgtgacttttatct 296
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 192 cttcctcttcctcctcctcctccttttttaaaaaaaaaatatgacctgtgacttttatct 133
Query: 297 c 297
|
Sbjct: 132 c 132
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
