CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACAAATGATCCCCGATACCTACCGTGTGCATGAAAATGTACAAGG
GTTTCTGTTCTGTAGATTTTTCTCCCCAGCCTCAGAGTGATGGAGGGGTC
TCTGCAAATGTTCCCACCATTAGACTGAAATACTATGTTATAGGCCTCTC
AGGATCCAATGGCAAGTGAATGTCATAGATGACCTTGTTACAGAAACTCC
AAGGAAGGAGGGAGACCTCTCTTTGGGCTTCACAGGCTGAAGGATTTCCA
TGAACCAAAGGATCAGGCATAGTATCCAAGATAGAGAGGATAAAGAGGAA
GGAGTTCAGAGTGATTTTTTTGGCCACCTCTCCTTTGAGAAGATGCTCCA
AGGTGAGCGACTTGCAGAGGCATACACAGGAAGTAACAGCAAGGAAAGAC
AGGACCTCAGGTCTTGCTGTGTGTAACTGTTCACCGGTCACTTTATTAGT
TGACTCTTGAACCTTTGATGTCCAGGGATGAGAATAGTTATGACAAAGTC
ACTCCACACCACTTCAGGGTTCTCATGTATGCTAGTTAGAGGTGGCACCA
ACTTAAAAAAAACAAAACAAAACATGTTTTAAGGTAAAAGCAGTTGCTAT
TGGAACCCAGATGGTGGCTGTATTGCCCCTGGGTATAAGTCTGCCCACTA
CCAGTTATACATTGTAAGGAGA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGGAGAATGCAAGAAATGAAGACA
TAAGTGAATTTGAGGAGGAAATGGCTAGAGCATCTATGAGAGCTCCTTTA
GGCTCCTCTGAGTACCAAAGAAGAAAGGGGTTAGTATGACAGCCACAGAA
AACCAGCCGGAGATGCCAAGCATCCTCAGAGAAGAGGAGAAGTCGGTAAA
GAAGGCAGGGGCCCAAATCCCAAGGAGGACACAGATCCAGGAGGATATGA
CAGATACATCTGCACCAAGATATCTCAAGAAACTTAGCTTCCACCAAGGA
TTGTCATGGGAGCTATTTCCTAGCTCTCGNNTCTGNACGCTGGTGAACCC
CAGAAGAACACATTCTAATCTCCAGGCACAAAATAACCACTCGCCAAACA
CTTCCAGCACTGGAAGAGGCAACTGTTGCAAGCTGTTTGGAATGACCTGA
TTATGCCAATCCTGATCCCTTCTGAGAAAAGGGGAGTATGAAGAGATAAC
AGGTCAGGAAAGCTGTCCACTGCTCTATGGAAAATGTCAGTTAGAAATAA
GTGGTACCCTGGGTCTGATGCTCCAGCTCCTCAACACACTCTGCAGAGAA
GCTGCACAGATGTAACCTGTCATGGCTACCAGCCCTACTTCCCAGCATGC
TCTTCTCTACCCCTGGGCCTCTCN

Query= MSMg01no269_h23.b1 MSMg01no269_h23.b1 CHROMAT_FILE:
MSMg01no269_h23.b1 PHD_FILE: MSMg01no269_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:59 2005
         (330 letters)



>mm_chr5_52476648_52477377
          Length = 730

 Score =  600 bits (310), Expect = e-176
 Identities = 325/330 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagaagatgctccaaggtgagcgacttgcagaggcatacacaggaagtaacagcaagga 60
           ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgagaagatgctccaaggtaagggacttgcagaggcatacacaggaagtaacagcaagga 471

                                                                       
Query: 61  aagacaggacctcaggtcttgctgtgtgtaactgttcaccggtcactttattagttgact 120
           |||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 470 aagataggacctcaggtcttgctgtgtgtaaccgttcactggtcactttattagttgact 411

                                                                       
Query: 121 cttgaacctttgatgtccagggatgagaatagttatgacaaagtcactccacaccacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cttgaacctttgatgtccagggatgagaatagttatgacaaagtcactccacaccacttc 351

                                                                       
Query: 181 agggttctcatgtatgctagttagaggtggcaccaacttaaaaaaaacaaaacaaaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agggttctcatgtatgctagttagaggtggcaccaacttaaaaaaaacaaaacaaaacat 291

                                                                       
Query: 241 gttttaaggtaaaagcagttgctattggaacccagatggtggctgtattgcccctgggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gttttaaggtaaaagcagttgctattggaacccagatggtggctgtattgcccctgggta 231

                                         
Query: 301 taagtctgcccactaccagttatacattgt 330
           ||||||||||||||||||||||||||||||
Sbjct: 230 taagtctgcccactaccagttatacattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no269_h23.g1 MSMg01no269_h23.g1 CHROMAT_FILE:
MSMg01no269_h23.g1 PHD_FILE: MSMg01no269_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:59 2005
         (292 letters)



>mm_chr5_52338816_52339507
          Length = 692

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggagaatgcaagaaatgaagacataagtgaatttgaggaggaaatggctagagcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tttggagaatgcaagaaatgaagacataagtgaatttgaggaggaaatggctagaacatc 260

                                                                       
Query: 61  tatgagagctcctttaggctcctctgagtaccaaagaagaaaggggttagtatgacagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgagagctcctttaggctcctctgagtaccaaagaagaaaggggttagtatgacagcc 320

                                                                       
Query: 121 acagaaaaccagccggagatgccaagcatcctcagagaagaggagaagtcggtaaagaag 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggaaaccagccggagatgccaagcatcctcagagaagaggagaagtcggtaaagaag 380

                                                                       
Query: 181 gcaggggcccaaatcccaaggaggacacagatccaggaggatatgacagatacatctgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggggcccaaatcccaaggaggacacagatccaggaggatatgacagatacatctgca 440

                                                             
Query: 241 ccaagatatctcaagaaacttagcttccaccaaggattgtcatgggagct 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagatatctcaagaaacttagcttccaccaaggattgtcatgggagct 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)