Query= MSMg01no270_n06.b1 MSMg01no270_n06.b1 CHROMAT_FILE:
MSMg01no270_n06.b1 PHD_FILE: MSMg01no270_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:35 2005
(305 letters)
>mm_chr5_29797507_29798211
Length = 705
Score = 532 bits (275), Expect = e-155
Identities = 294/309 (95%), Gaps = 15/309 (4%)
Strand = Plus / Minus
Query: 1 atacacccccagctcaggagatgcttccctggaacaaag----gcgggacgctgaaggaa 56
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 642 atacacccccagctcaggagatgcttccctggaacaaaggcaagcgggacgctgaaggaa 583
Query: 57 gaaacaaccacaaggacaccccccttccatttctccctactagggtacagcaggacagca 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gaaacaaccacaaggacaccccccttccatttctccctactagggtacagcaggacagca 523
Query: 117 aatctttagtttggcgcgcatatccgcggctagcctcagtgtctcaagccagcagtttaa 176
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 522 aatctttagtttggcgc-----------gctagcctcagtgtctcaagccagcagtttaa 474
Query: 177 tcgcggcggaatttatctcgctaataaatttaatgatcaattcgttcttgtcacagtagc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcgcggcggaatttatctcgctaataaatttaatgatcaattcgttcttgtcacagtagc 414
Query: 237 tcttccccaaatcaattatagcaaatttaaatataatcactggctcatcctagcttactc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tcttccccaaatcaattatagcaaatttaaatataatcactggctcatcctagcttactc 354
Query: 297 cgggcacgg 305
|||||||||
Sbjct: 353 cgggcacgg 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_n06.g1 MSMg01no270_n06.g1 CHROMAT_FILE:
MSMg01no270_n06.g1 PHD_FILE: MSMg01no270_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:35 2005
(360 letters)
>mm_chr5_29616049_29616808
Length = 760
Score = 648 bits (335), Expect = 0.0
Identities = 353/359 (98%)
Strand = Plus / Plus
Query: 1 atgtttactaggctctgtgaccagctgctcggcctccctggactacgatcctagaaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atgtttactaggctctgtgaccagctgctcggcctccctggactacgttcctagaaaatc 260
Query: 61 agactagcatcacccaacacgtggcttgtcatcaagatgaaatgaaactgagtgtcacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactagcatcacccaacacgtggcttgtcatcaagatgaaatgaaactgagtgtcacat 320
Query: 121 atagcacttagaaccagcatggggcagatgaattcagtaatgagccacagtcactgggtg 180
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 321 gtagcacttagaaccagcatggggcagatgaattcagcaatgagccactgtcactgggtg 380
Query: 181 ttaggaaaaagtaaagacaactaaaattgtggaagtgctgttaataaggccgtctggggc 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ttaggaaaaagtaaagacaactaaaattgtggaagtgctgttaatacggccgtctggggc 440
Query: 241 aggtgactcagaagcactttgctttacaaatgaggaggtggagctcgaagtgctgagcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgactcagaagcactttgctttacaaatgaggaggtggagctcgaagtgctgagcta 500
Query: 301 agtcaacagcacttggcagactgtaagtagcttccttatcttctcactgccatctgtag 359
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 agtcaacagcacttggcagactgtaagtagcttccttattttctcactgccatctgtag 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space: 263601
Effective search space used: 263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
