Query= MSMg01no270_p06.b1 MSMg01no270_p06.b1 CHROMAT_FILE:
MSMg01no270_p06.b1 PHD_FILE: MSMg01no270_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:44 2005
(691 letters)
>mm_chr5_69480557_69481642
Length = 1086
Score = 1247 bits (645), Expect = 0.0
Identities = 676/689 (98%), Gaps = 7/689 (1%)
Strand = Plus / Plus
Query: 5 gaattctgtcagcactcagcctgcttcaacaagttttgaacaaggaaagataatataagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctgtcagcactcagcctgcttcaacaagttttgaacaaggaaagataatataagg 262
Query: 65 aagcataatcttctcactgatagtcattcaaacga--ttttttcaaatgtacatttcaaa 122
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 263 aagcataatcttctcactgatagtcattcaaacgattttttttcaaatgtacatttcaaa 322
Query: 123 atactactgcataacttatgtcatttagaatatatgaaaccaaacataattgtaagtagg 182
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ataatactgcataacttatgtcatttagaatatatgaaaccaaacataattgtaagtagg 382
Query: 183 attttattttaaatcacttagtcacaagaaaacttacatggcattggatataggagaaaa 242
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 383 attttattttaaatcacttagtcacgagaaaacttacatggcatgggatataggagaaaa 442
Query: 243 gcattattgactctgagatgcaagttgtagaagaagaaacattaaaatagaatttaatag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcattattgactctgagatgcaagttgtagaagaagaaacattaaaatagaatttaatag 502
Query: 303 tgaagttatatatgattgcccatattcaatgcattttatataaatattaatggttaaatt 362
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 503 tgaagttatatatgattgcccatattcaatgtattttatataaatattaatggttaaatt 562
Query: 363 aaatcacaatctctaataagtaataatatatgcatatacatggttaatatctattaaact 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaatcacaatctctaataagtaataatatatgcatatacatggttaatatctattaaact 622
Query: 423 ttatacaactgaaaaataattatatagcctaataaattataaattttatgtaatagttta 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 623 ttatacaactgaaaaataattatatagcctaataaattataaattttatgtaatggttta 682
Query: 483 aactatataaataccatatataagtgtgcttcatatgcatttgtgtctctctgtgtaatt 542
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 683 aactatataaataccatatataagtg--cttcatatgcatttgtgtctctctgtgtaatt 740
Query: 543 atatcttgtagatgatacacttgctatatttttactataatgtcttaaccaagtaaaata 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatcttgtagatgatacacttgctatatttttactataatgtcttaaccaagtaaaata 800
Query: 603 aaattgctaacatgtaaatattattacattactatattatagatattactgtctaaattt 662
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 801 aaattgctaacatgtaaatatta---cattattatattatagatattactgtctaaattt 857
Query: 663 atccaataagtgtattttctgcatcacag 691
|||||||||||||||||||||||||||||
Sbjct: 858 atccaataagtgtattttctgcatcacag 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1086
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1076
Effective search space: 732756
Effective search space used: 732756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_p06.g1 MSMg01no270_p06.g1 CHROMAT_FILE:
MSMg01no270_p06.g1 PHD_FILE: MSMg01no270_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:44 2005
(667 letters)
>mm_chr5_69675168_69676234
Length = 1067
Score = 1272 bits (658), Expect = 0.0
Identities = 664/666 (99%)
Strand = Plus / Minus
Query: 1 tctccccacacttgaagatgaggaatgggatcagagaaggtcatatttgtgcctgctggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tctccccacacttgaagatgaggaatgggatcagagaaggtcatatttgtgcctgctggt 807
Query: 61 ggtctggcataagtcagcaaggcaaagagggtgaacttcgagaagactgggcctccctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ggtctggcataagtcagcaaggcaaagagggtgaacttcgagaagactgggcctccctgg 747
Query: 121 tacaggcaaaggctttgggtttgaatctactttacataaaggacaaggcatttgctagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tacaggcaaaggctttgggtttgaatctactttacataaaggacaaggcatttgctagag 687
Query: 181 atgaatcatttctacataggaaagcgtccttctgtgttttgaacgaggtgctaaagccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atgaatcatttctacataggaaagcgtccttctgtgttttgaacgaggtgctaaagccta 627
Query: 241 ccacgtggatttggcacagctgggattttattatagatttgccacagtataatgataatg 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 626 ccacgtggatttggcacagctgggattttattatagatttgccacagtagaatgataatg 567
Query: 301 aggagttatttctctgtactaaggatacaacttgtaatcatgtctctctcggttttaaga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tggagttatttctctgtactaaggatacaacttgtaatcatgtctctctcggttttaaga 507
Query: 361 gaattgaaaaagtgtgtatgaaatctgagctgatttgcaggagcataaattaccgcacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaattgaaaaagtgtgtatgaaatctgagctgatttgcaggagcataaattaccgcacaa 447
Query: 421 gactttgcctgggagtgcatccttaaatcatctgctaaaatgttgctgaaaggctgatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gactttgcctgggagtgcatccttaaatcatctgctaaaatgttgctgaaaggctgatgc 387
Query: 481 aatttcattaatgtgaacttgttgcatcttggaatgggcttgtgcattaagtatccagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aatttcattaatgtgaacttgttgcatcttggaatgggcttgtgcattaagtatccagat 327
Query: 541 gggaacctaccactagcacttccacctaccaatggggagttctgtaggggctgttctgca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gggaacctaccactagcacttccacctaccaatggggagttctgtaggggctgttctgca 267
Query: 601 gtacctttccctcctgtttcaggccagctgtttctgtggtacatacatactcttctatga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtacctttccctcctgtttcaggccagctgtttctgtggtacatacatactcttctatga 207
Query: 661 cctcct 666
||||||
Sbjct: 206 cctcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
