BAC Information

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BAC

Clone NameMSMg01-271G15
Chromosome5 (Build37)
Map Location 5,210,472 - 5,210,780
singlet/doubletsinglet
Overlap genePftk1
Upstream geneFzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271G15.T7 (MSMg01no271_g15.b1)MSMg01-271G15.TJ (MSMg01no271_g15.g1)
ACCAG410974AG410975
length739750
length of high quality
(start - end)
313 (43 - 355)588 (70 - 657)
definitionCHROMAT_FILE: MSMg01no271_g15.b1 PHD_FILE: MSMg01no271_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:17 2005CHROMAT_FILE: MSMg01no271_g15.g1 PHD_FILE: MSMg01no271_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACTCATTACCTCTGGAAGAGCTGCCAATGCCCTTAACTGTTGATCCA
TCTCTCCAGCCCTGAATGCCTATTTATTAAAAGACATGAAAAGCCATGAA
GGAACGGGACACAACGTATGGTCCTGGCCACATGGGGACAAAGACAGCAA
GGCTGCTTGCCTCTGAGATGACACAGCTAGACAGTGTGCTATATACGGTG
ACATTAAACAGAAGTGAACTTATTTTCATGACAAATGCACTAGCAGGTTA
CACTCCATGAACTCATACAGATGACTTTAGACCTGTGCAAACTGAAGCTT
AAGTATTCTTTTGTCTACCTCACCACATAATTTCCCGTGTCCTGACTTTA
AAACACTGTCCTGGAGCCATCATTCAAAGCCTTGTGCTGTGGTTTTTTTC
CTTTGGGAGGTGACTTGATCATAAAGGCTCTGACTTCATCAATGAATTAT
ATATTAATGGATCTATCACAGAAAAAGGCTGTCTATTGAAAAAGGAGTCT
CCTTGGAGGTATGATGTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTNTNNNNNNNNNNNNNNNNNNNNNNTNNNNNTNNTNNTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTN
TTTTNTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCAGGTCCAACTGTGGGTAGAGGGAAGCT
GATGTATGGTTAATGAATGTCAACTGAAGAACAAGAGAATAAAATCAAGC
ATCATCCTTTGAAAGTTTGTTGATGTCCTGAGACACGGTAGGTAAGTTAT
CACTAAACTTAATTCCTTAAAGGAACGCCATACATCCCTTCTCTCCCAGA
ATTCCTGTGTGGCAGGAATTTGGGCGTGCCCAGCCTTGTGTTTCTGGCTC
TTCTGTCCCTTAGAAGATGTCAGTTGGAGCTGGAGTGCTGTGAAGGCTTG
ACTGATTCTGGAGGACTGTCTGCTCACTGACTCAACCATTGGCTGTTGGC
AGAAAGCCCCAGTTCTTGCCACATGGATGCCTTTGTAGGGCTGCCCAAGT
ATCCTCTTGTGGTGGCTTCTTCCAGAAGGAGGAATCCAAGAGAGAAAGCC
CAGTGGGAGCCACATGCCTTTTGTGACCTTAGAAATCATGTACTGCCATT
TCTTCTGTATTCTATTGGTCTCACAGATGAACACTGCTTAGGATAGAAGG
CGACTCCTATACCAAGTAAATGCCAGGCAAAGGACGATCCTGGGGCGTTT
CCCAGAGAATGTCCACCCTTTCTGCAAAGCCTCACATCTCTCCCACCTGT
CAGACAGAATGCTCACTCTGCTCTAGAACCCATGGTTCATCTTTAGAGGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_g15.b1 MSMg01no271_g15.b1 CHROMAT_FILE:
MSMg01no271_g15.b1 PHD_FILE: MSMg01no271_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:17 2005
         (313 letters)



>mm_chr5_5210268_5210980
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaactcattacctctggaagagctgccaatgcccttaactgttgatccatctctc 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaactcaggacctctggaagagctgccaatgcccttaactgttgatccatctctc 264

                                                                       
Query: 65  cagccctgaatgcctatttattaaaagacatgaaaagccatgaaggaacgggacacaacg 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagccctgaatgtctatttattaaaagacatgaaaagccatgaaggaacgggacacaacg 324

                                                                       
Query: 125 tatggtcctggccacatggggacaaagacagcaaggctgcttgcctctgagatgacacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatggtcctggccacatggggacaaagacagcaaggctgcttgcctctgagatgacacag 384

                                                                       
Query: 185 ctagacagtgtgctatatacggtgacattaaacagaagtgaacttattttcatgacaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagacagtgtgctatatacggtgacattaaacagaagtgaacttattttcatgacaaat 444

                                                                       
Query: 245 gcactagcaggttacactccatgaactcatacagatgactttagacctgtgcaaactgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcactagcaggttacactccatgaactcatacagatgactttagacctgtgcaaactgaa 504

                    
Query: 305 gcttaagta 313
           |||||||||
Sbjct: 505 gcttaagta 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)