Query= MSMg01no271_i09.b1 MSMg01no271_i09.b1 CHROMAT_FILE:
MSMg01no271_i09.b1 PHD_FILE: MSMg01no271_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:25 2005
(304 letters)
>mm_chr5_49401760_49402463
Length = 704
Score = 572 bits (296), Expect = e-168
Identities = 302/304 (99%)
Strand = Plus / Minus
Query: 1 agtcagcctggattgtacaacctgtccctgtctcattttttaagtacccatttgtgatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtcagcctggattgtacaacctgtccctgtctcattttttaagtacccatttgtgatga 346
Query: 61 atgaatatatttaagctattttacttaggtgagtgtttcaaagtttcattatttcaactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atgaatatatttaagctattttacttaggtgagtgtttcaaagtttcattatttcaactc 286
Query: 121 aattaataaaaaatgataataaaatatctcacactcatttttgtgccaagggtttaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aattaataaaaaatgataataaaatatctcacactcatttttgtgccaagggtttaatat 226
Query: 181 ctgtcatatcttttatacaattcagattatatactattaatttaaaagaaaattttattt 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 225 ctgtcatatcttttatacaattcaggttatatactattaatttaaaagaaaattttattt 166
Query: 241 agttttcttttgagctacatgaactgtatacagactttacaaaatttataattcactgaa 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 165 agttttcttttgagctacatgaactgtctacagactttacaaaatttataattcactgaa 106
Query: 301 ggat 304
||||
Sbjct: 105 ggat 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_i09.g1 MSMg01no271_i09.g1 CHROMAT_FILE:
MSMg01no271_i09.g1 PHD_FILE: MSMg01no271_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:25 2005
(239 letters)
>mm_chr5_49274529_49275171
Length = 643
Score = 422 bits (218), Expect = e-122
Identities = 230/236 (97%), Gaps = 4/236 (1%)
Strand = Plus / Plus
Query: 4 tggctcaacttggtattcatcccaccctctattctctctctggtggctagaattacctat 63
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 tggctcaacttggtattcatcccaccctctattctctccctggtggctagaattacctat 263
Query: 64 gttccttcttgttttatactttctaataatggctagaatataggttttatgtgggcaact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttccttcttgttttatactttctaataatggctagaatataggttttatgtgggcaact 323
Query: 124 gtcccaatcaaagcttaaatctcaagagaggctatcttcagctcctaagagttttggtgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtcccaatcaaagcttaaatctcaagagaggctatcttcagctcctaagagttttggtgc 383
Query: 184 attatttcagaatcctactgccatattgagcaca----gtgttgtacctgccattc 235
||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 attatttcagaatgctactgccatattgagcacattgagtgttgtacctgccattc 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 643
Length adjustment: 9
Effective length of query: 230
Effective length of database: 634
Effective search space: 145820
Effective search space used: 145820
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
