Query= MSMg01no271_j09.b1 MSMg01no271_j09.b1 CHROMAT_FILE:
MSMg01no271_j09.b1 PHD_FILE: MSMg01no271_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:29 2005
(241 letters)
>mm_chr5_90832142_90832782
Length = 641
Score = 329 bits (170), Expect = 1e-94
Identities = 220/250 (88%), Gaps = 26/250 (10%)
Strand = Plus / Plus
Query: 4 ggaattcctttcttggaacggtttcctggaagattcacagactcaccaaaacccgcagct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctttcttggaacggtttcctggaagattcacagactcaccaaaacccgcagct 263
Query: 64 gaatttgagtcgtgtgagggtggcggcttgtcctcagtgagggtgggactgcctgctgct 123
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 gaatttgagtcctgtgagggtggcggcttgtcctcagtgagggtgggactgcctgccgct 323
Query: 124 gtccgccttaccttcccgaagtagcttttctctccttct---gcctgcgagctacacaac 180
||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 gtctgccttacctt---gaagtagcttttctctccttcttctgcctgcgagctacacaac 380
Query: 181 tgacgccaccttaggcttg-c-ctctg-------------tg-----tgtgtgtgtgtgt 220
|||||||||| |||||||| | ||||| || |||||||||||||
Sbjct: 381 tgacgccaccctaggcttgactctctggatagcctttttttgatagctgtgtgtgtgtgt 440
Query: 221 gtgtgtgtgt 230
||||||||||
Sbjct: 441 gtgtgtgtgt 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no271_j09.g1 MSMg01no271_j09.g1 CHROMAT_FILE:
MSMg01no271_j09.g1 PHD_FILE: MSMg01no271_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:29 2005
(290 letters)
>mm_chr5_91048586_91049275
Length = 690
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Minus
Query: 1 tttccagggtcattgcccggaatgtgtggacccctggaaatgtgcatgctggaaatggca 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tttctagggtcattgcccggaatgtgtggacccctggaaatgtgcatgctggaaatggca 430
Query: 61 agtgaggaaaagtgagtctgaaaagcatgttgttctgattccaacgtgtagaaacagcgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agtgaggaaaagtgagtctgaaaagcatgttgttctgattccaacgtgtagaaacagcgt 370
Query: 121 gcatagagcctgttgttcagtgttcagtccgtgtttgttgaatagcagcttctaataagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcatagagcctgttgttcagtgttcagtccgtgtttgttgaatagcagcttctaataagc 310
Query: 181 aagcatccattctgatcagcaggaaaggtcagcaagtgaaaccaagctgatagctctcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aagcatccattctgatcagcaggaaaggtcagcaagtgaaaccaagctgatagctctcgt 250
Query: 241 ggcccatatgataatggcaaaggtgtctgaggatcaaggagatagaatg 289
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggcccatatgagaatggcaaaggtgtctgaggatcaaggagatagaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
