Query= MSMg01no271_p15.b1 MSMg01no271_p15.b1 CHROMAT_FILE:
MSMg01no271_p15.b1 PHD_FILE: MSMg01no271_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:59 2005
(315 letters)
>mm_chr5_66950036_66950750
Length = 715
Score = 563 bits (291), Expect = e-165
Identities = 306/311 (98%), Gaps = 2/311 (0%)
Strand = Plus / Plus
Query: 5 gaattcacaaaa-ctgtcacctaaaaataatttacacataaaataaaatgctactttact 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaaaaactgtcacctaaaaataatttacacataaaataaaatgctactttact 264
Query: 64 gtgatcctcagagatctcaatatttacagcagtaacagtaactgagctttactggactaa 123
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 265 gtgatcctcagagatctcaatatttacagtagtaacagtaactgagctctactggactaa 324
Query: 124 attggtgtcaaaaacagatcatttcacacagctcccaagaagcaggtactatgatttcat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attggtgtcaaaaacagatcatttcacacagctcccaagaagcaggtactatgatttcat 384
Query: 184 tttttatttttattcaaaaactgaagtggaagcagagaaaaataactttcccaaagactc 243
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttt-ttcttattcaaaaactgaagtggaagcagagaaaaataactttcccaaagactc 443
Query: 244 accacttaggaatggaaataaaagcccagatccgctgtactctttcatgcatcccacctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 accacttaggaatggaaataaaagcccagatccgctgtactctttcatgcatcccacctg 503
Query: 304 gtctccccatc 314
|||||||||||
Sbjct: 504 gtctccccatc 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_p15.g1 MSMg01no271_p15.g1 CHROMAT_FILE:
MSMg01no271_p15.g1 PHD_FILE: MSMg01no271_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:59 2005
(631 letters)
>mm_chr5_67137272_67138302
Length = 1031
Score = 1151 bits (595), Expect = 0.0
Identities = 622/631 (98%)
Strand = Plus / Minus
Query: 1 caagagtggatcacaaatcacctctcccactctcgccctccacgcgtcctgaacccaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 caagagtggatcacaaatcacctctcccactctcgccctccacgcgtcctgaacccaaag 772
Query: 61 accgggttgtttcagaatagcagggctactgagctgcacctgcagatagacatcatgaat 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 accggattgtttcagaatagcagggctactgagctgcacctgcagatagacatcatgaat 712
Query: 121 caggatcacccagcgagcgcttcctggactgagccgagagcgccagtgatttccttggcc 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 711 caggatcacccagcgagcgcttcctggactgagccgagagctccagtgatttccttggcc 652
Query: 181 ttccaccgagccatttaagaagtgaaatgtgccaacctggcccggtacggggcctgctgc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttccaccgagtcatttaagaagtgaaatgtgccaacctggcccggtacggggcctgctgc 592
Query: 241 agcccaccctgcggtctctgggacaaccgatagctgggcagcgtgtctacggatagcgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agcccaccctgcggtctctgggacaaccgatagctgggcagcgtgtctacggatagcgca 532
Query: 301 ctcacaactaggtcttgcaggttcccccctacgctgtgctccgcgccagccttgcacctg 360
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 531 ctcacaactaggtcttgcaggttcccccctacgctgtgctctgcgccaaccttgcacctg 472
Query: 361 aacgggtgccagaacacagccaagaggcttggatgggtatgagcctcagtggtgacactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 471 aacgggtgccagaacacagccaagaggcttggatgggtatgagcctcagtggtgatactg 412
Query: 421 ccaactctgctccggaagggcgaagggagaggccaagggaatgtggagcagtgagcggga 480
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 411 ccaactctgctccggaagggagaagagagaggccaagggaatgtggagcagtgagcggga 352
Query: 481 caccccgaaatgcggctcccgcaaagggctctggaagctcgagcccctgtagcctttgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 caccccgaaatgcggctcccgcaaagggctctggaagctcgagcccctgtagcctttgca 292
Query: 541 gcgctacggctcgcactgcgctttccgtagcagcacttgcaaaccaagcggagattgcga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gcgctacggctcgcactgcgctttccgtagcagcacttgcaaaccaagcggagattgcga 232
Query: 601 gctctgcaggcagcagggatgaaggcgcagg 631
|||| ||||||||||||||||||||||||||
Sbjct: 231 gctccgcaggcagcagggatgaaggcgcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
