BAC Information

Click to search

BAC

Clone NameMSMg01-272C15
Chromosome5 (Build37)
Map Location 15,283,399 - 15,283,714
singlet/doubletsinglet
Overlap genenone
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272C15.T7 (MSMg01no272_c15.b1)MSMg01-272C15.TJ (MSMg01no272_c15.g1)
ACCAG411524AG411525
length749750
length of high quality
(start - end)		320 (46 - 365)362 (389 - 750)
definitionCHROMAT_FILE: MSMg01no272_c15.b1 PHD_FILE: MSMg01no272_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:14 2005CHROMAT_FILE: MSMg01no272_c15.g1 PHD_FILE: MSMg01no272_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCAGTGTGACCAGGACAGAATTCATTTAGGAAAATGAGAGACAT
GAGTTTCTGGCACAGGTTCATGCACATATGATCTTAAGAGCCACATGAAA
ATAGGTTTCTCCTAGGAGAAGAAACTTATGATTGGAGAGCTACATGATCA
GCTTCATCTTTTGCAATGTGTCTGAAAGATTGGGCTAAGAGCAGGGCCCA
CGAGTGTCAGACTCACTTAAGCCAGAAAGAAGCAAAGAAGCAGTCATGAA
TTCACCTCAGAGGTGTGAGCAAAAATACATGGAATCAGCTGGGACCCAGC
ACCTGTGAGCCAAGTGTATAGAAAAATACCAGGGCACCTGAAATGCATAT
AAAGGGTCATGCAAATATCCCCCAAACAGAAGAGCAACCTCATAGTATAG
CCTTCTTAGCAGAACTCACAGTGAGAGAAACACAGGATTCAACACAACTT
CACTCTCTTCCTTTCTTACCATCATCCTACAAGCTGTCCTTAATAGGCCT
ACAATTTACTCTCTCAGAGCTCTATAGACCAGAAAATTCAAGGTCTCACC
AGTTCAGCTTTCTGGTGTATTTTGTAAGGGTGCTACTAGCCCTATTAGTT
CAAGGGCCCACCTTTATGACTTAATTTCATCTTAATTACTTCTTACTCTT
AGGATAGTCACTTTGGGATTGGGGATCCACATTTCATATTGAGAGTGTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATGGAATTAGATTTTTCAAATT
TTATATTTTATTAAAAAAGAGAGAATCATTGTCTACAAATTCTTTTATGT
CCAACTATGCAAATACAACTTCAAGTACTCTGGAAATTCTATGATGGTGC
TATCAATTTCAGGAATTTCCAACAGGACACATAACAAGAAAAATCCATAT
AGTACAAGTCTTAGGTGTTAGGTGAATTTTCAAATCAGAAAGCAAAGAGA
AGAATTTACATTTTCAGTAACTTTAGGATCTGTGAGTGTTGTTAATTTAA
ATACCGTTATGAGGAGTTCTAGGTACAGCACCATATTAGGCCATGCAATT
GTATAGGGAGATACAGAAGCTACATAGTACTTCAAGTGTTGCTATCATAT
ATGTCTAAGTGACATTTTACAGATTAATGCCAAGTAAAATCAAAATATAG
TCCCCTACCCATTACATCTTAAAACGCAAAGATCTATCAACAGTTGCCAT
TTCACAGCAGAAAGAAAGCAGTAGGTATAAATTGAACACAGAACTGCTTC
TCTTGTAAGAAATGAACACAGATATATAGATGCATGTATACTTATACATT
CTCTTTCAAATTCAAGGTGATTAATTTGCTTTAATACCATATAAAAACAA
TCTCGCTGTGGTCAGGTAAAAAAGCTCATTTTCCACATTTAAAAAGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_c15.b1 MSMg01no272_c15.b1 CHROMAT_FILE:
MSMg01no272_c15.b1 PHD_FILE: MSMg01no272_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:14 2005
         (320 letters)



>mm_chr5_15283195_15283914
          Length = 720

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcagtgtgaccaggacagaattcatttaggaaaatgagagacatgagtttctg 64
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 520 gaattcctcagtgtgacaaggacagaattcatttaggaaagtgagagacatgagtttctg 461

                                                                       
Query: 65  gcacaggttcatgcacatatgatcttaagagccacatgaaaataggtttctcctaggaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gcacaggttcatgcacatatgatcttaagagccacatgaaaataggtttctcctaggaga 401

                                                                       
Query: 125 agaaacttatgattggagagctacatgatcagcttcatcttttgcaatgtgtctgaaaga 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 400 agaaacttatgattggagagctatatgatcagcttcatcttttgcaatgtgtctgaaaga 341

                                                                       
Query: 185 ttgggctaagagcagggcccacgagtgtcagactcacttaagccagaaagaagcaaagaa 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 340 ttgggctaagagcagggcccacgagtgtcagattcacttaagccagaaagaagcaaagaa 281

                                                                       
Query: 245 gcagtcatgaattcacctcagaggtgtgagcaaaaatacatggaatcagctgggacccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcagtcatgaattcacctcagaggtgtgagcaaaaatacatggaatcagctgggacccag 221

                           
Query: 305 cacctgtgagccaagt 320
           ||||||||||||||||
Sbjct: 220 cacctgtgagccaagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |