BAC Information

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BAC

Clone NameMSMg01-272D02
Chromosome5 (Build37)
Map Location 79,816,278 - 79,816,625
singlet/doubletsinglet
Overlap genenone
Upstream geneMthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272D02.T7 (MSMg01no272_d02.b1)MSMg01-272D02.TJ (MSMg01no272_d02.g1)
ACCAG411545AG411546
length753755
length of high quality
(start - end)
348 (374 - 721)250 (69 - 318)
definitionCHROMAT_FILE: MSMg01no272_d02.b1 PHD_FILE: MSMg01no272_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:17 2005CHROMAT_FILE: MSMg01no272_d02.g1 PHD_FILE: MSMg01no272_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAATCCGCGGAATTCTAG
AAATATTATTACAAACACGCTCATCTGTTCTGTTAATCTTTTCTTCTATA
CTATTTGCTTCTAAAGATATTGGTATTTTCTAACATATGCACATAATTTT
ATCATAATGTAAATCCAAAATATACTTTAGATAATCAATTTCCTCTTATT
CAATGTATCAGCATTCAGTCACAAAATAATTTTACCCTCATTAATATTAT
CAAATTTCATTGTAAATCAAGTGAATGAACTTTAAACAGCATGCTTAAGT
CTATGCATCTCTCTTCATTTATAAAACAGGCAATAAATACAATAATAGTT
CTTTTTCTTCAATAGGTCTTAGATTATGCCTAATTATAAGTTCCCTGATA
CTTGAATGAGTGCATTTTGGTGTACTTAATATTAGATAACAGAGAAATCT
TTAAAAGCCAAGAAATTTCAAATAATATTAAACATATTTTCTGTGACTTA
TGTGATTGAAACTGATTGAATTCATATACCTGCTTATATTTATATTAAAG
TAAAAATCTCAATTACTAACCACTTATTAAAAGAAATTACTTGAGACAAC
TTTAAAGAATTAAAAACCCTACAATTTTAGGCACCAACATTTTTATAGTC
AATTACTTTAGTATAATATGAATAATTGAAACAAAATTCTGCTTTATTCA
AGTAATATACTTGTCTGAGTAAGGGTTTCTATAACTGTGAAGACACACCA
TGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGAT
ATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTATTAGGGTGTCCTGTA
CTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGTT
TCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAAACTCTGG
AGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTT
TGTTACCCTCAATCAGCAGGCGTGGGAGACAAGCTCTCTCCTCTGAGTTT
CAGTGGTCTTTGCTGACTCTCCCCCCCCCCTCTCCTCTTTCGGGGAAGGT
GTACAGTTATCTGGTGTTTGGACCTCCTCACATGATCATGGTGAAGGCCC
AAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCATTATTGTGGCC
GGTTGTTCTGGAGTCGAAGATGGCGCCGCCTCAGAATCTCTGTGGCTCTC
GCCAGAAAGGTGCCTGGTTGTCTGGATCCTAATATGGTGCCGCCCTATAA
GCTCTGCGACTCTTGCCAGTACCATAAACAGCTGGCCTCTGTATTTCCAT
CGGACTCCCGTGCATCTTGTCCTCCGCGGAATCCCTTATCTTAGATAGCT
CCCTTCGTCGACTGTGTAAATATTTCGTTATGGATGGGCACACCTTTTTG
CTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_d02.b1 MSMg01no272_d02.b1 CHROMAT_FILE:
MSMg01no272_d02.b1 PHD_FILE: MSMg01no272_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:17 2005
         (348 letters)



>mm_chr5_79816078_79816825
          Length = 748

 Score =  673 bits (348), Expect = 0.0
 Identities = 348/348 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatgcctaattataagttccctgatacttgaatgagtgcattttggtgtacttaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttatgcctaattataagttccctgatacttgaatgagtgcattttggtgtacttaatatt 489

                                                                       
Query: 61  agataacagagaaatctttaaaagccaagaaatttcaaataatattaaacatattttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agataacagagaaatctttaaaagccaagaaatttcaaataatattaaacatattttctg 429

                                                                       
Query: 121 tgacttatgtgattgaaactgattgaattcatatacctgcttatatttatattaaagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgacttatgtgattgaaactgattgaattcatatacctgcttatatttatattaaagtaa 369

                                                                       
Query: 181 aaatctcaattactaaccacttattaaaagaaattacttgagacaactttaaagaattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaatctcaattactaaccacttattaaaagaaattacttgagacaactttaaagaattaa 309

                                                                       
Query: 241 aaaccctacaattttaggcaccaacatttttatagtcaattactttagtataatatgaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaaccctacaattttaggcaccaacatttttatagtcaattactttagtataatatgaat 249

                                                           
Query: 301 aattgaaacaaaattctgctttattcaagtaatatacttgtctgagta 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aattgaaacaaaattctgctttattcaagtaatatacttgtctgagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)