Query= MSMg01no272_f10.b1 MSMg01no272_f10.b1 CHROMAT_FILE:
MSMg01no272_f10.b1 PHD_FILE: MSMg01no272_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:28 2005
(322 letters)
>mm_chr5_41484645_41485367
Length = 723
Score = 582 bits (301), Expect = e-171
Identities = 313/319 (98%), Gaps = 5/319 (1%)
Strand = Plus / Plus
Query: 5 gaattctttgagc---tgctcttatttctctgtctcccatcatgagagagagcaggtagc 61
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgagcaagt--tcttatttctctgtctcccatcatgagagagagcaggtagc 262
Query: 62 ttatgtgctgtacagtacgcttttaaatgggaggagagtgcacaggtcacctagggtcct 121
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttatgtgctgtacagtaagcttttaaatgggaggagagtgcacaggtcacctagggtcct 322
Query: 122 agggcaaaagatgatcccattttacaggatgtataaccaggccatgatcagatggtgtag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agggcaaaagatgatcccattttacaggatgtataaccaggccatgatcagatggtgtag 382
Query: 182 tcactaagtggcatgacctaggcaagtgtccagactcctacgtcccaacttgtagactct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcactaagtggcatgacctaggcaagtgtccagactcctacgtcccaacttgtagactct 442
Query: 242 tctcagtatcaaatgtgtgaaactctaggacaagatggacaggttttccattttcccact 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctcagtatcaaatgtgtgaaactctaggacaagatggacaggttttccattttcccact 502
Query: 302 ttgtgtaggcagtgctgaa 320
|||||||||||||||||||
Sbjct: 503 ttgtgtaggcagtgctgaa 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 723
Length adjustment: 9
Effective length of query: 313
Effective length of database: 714
Effective search space: 223482
Effective search space used: 223482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_f10.g1 MSMg01no272_f10.g1 CHROMAT_FILE:
MSMg01no272_f10.g1 PHD_FILE: MSMg01no272_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:28 2005
(296 letters)
>mm_chr5_41612572_41613269
Length = 698
Score = 565 bits (292), Expect = e-165
Identities = 296/298 (99%), Gaps = 2/298 (0%)
Strand = Plus / Minus
Query: 1 acagttttgtaatggagagtctttgtaccttaaaactattaaaaaggagtcttatgagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acagttttgtaatggagagtctttgtaccttaaaactattaaaaaggagtcttatgagac 618
Query: 61 agctcagctgtgagggcacttcttgccaagacttaagacctggtttgttccctgagaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agctcagctgtgagggcacttcttgccaagacttaagacctggtttgttccctgagaccc 558
Query: 121 acatggtagaagtaaagaaccaactcttgcaagttgttctccaactttcacatgtgggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acatggtagaagtaaagaaccaactcttgcaagttgttctccaactttcacatgtgggca 498
Query: 181 gggtacatagagttcctcatgactaaaac--aaaaaaaatctaagaaaatattttcaaat 238
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 497 gggtacatagagttcctcatgactaaaacaaaaaaaaaatctaagaaaatattttcaaat 438
Query: 239 gaggaacagggtgcttaaggctaaaggcttatgtctagaatatgtttttattttttgt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaggaacagggtgcttaaggctaaaggcttatgtctagaatatgtttttattttttgt 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 698
Length adjustment: 9
Effective length of query: 287
Effective length of database: 689
Effective search space: 197743
Effective search space used: 197743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
