BAC Information

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BAC

Clone NameMSMg01-272J20
Chromosome5 (Build37)
Map Location 70,476,525 - 70,476,893
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1, Gabra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272J20.T7 (MSMg01no272_j20.b1)MSMg01-272J20.TJ (MSMg01no272_j20.g1)
ACCAG411851AG411852
length754752
length of high quality
(start - end)
369 (382 - 750)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no272_j20.b1 PHD_FILE: MSMg01no272_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:48 2005CHROMAT_FILE: MSMg01no272_j20.g1 PHD_FILE: MSMg01no272_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATAAATAATTACATTTTGTAATAATATCATCATTATTTAAGCTAAGTAT
TCATGCAATTTGGAAGTGAACACATTTCCCCTATCCCCAGATATCATTCA
TTTTAACATTCATCCTTTTATACTCTTCCTTAAAGTGGACAGGTGTTATC
TTGGCAGCTTGCTCCCTTGGTTTCCTTCTTCCCAAACCTTAAAACCAGGG
CTATCAATCATTGTGTTCATCTCTCCAGAACCCATCACACTCTTACCTGT
GTTATTAAATACAATACTTTTGATCTGCTCGCATCTCTATAGTTATAAAG
GAGAGGAATTTGTTTTCAATGTCCCACCCACATGTTTTATAAAATATTAT
TATAGGACACACATGTGTCGAGATGTAAAACATTATCACTCAAGAGAATA
TAACATGAATAAATGCAACTGGATGAAGGTTGCTTATAGTTAAGGTTTTA
GTGCTGTGAACAGATACCATGGCCAAGGCAACTCTTATAAGGACAACATT
TAATTGTGTCTGGCTTACACGTCCAGAGTTTCAGTCCATAATCATCAAGG
TGGGAATATGGCACCATTTAGGCAGACATGGTGCAGGAGAAGCTGAGAGT
TCTACATCCTTACCTGAAGGCTGCTAGCAGAATACTGACTTCCAGGCAGC
TAGGACGAGGACCATGAAGCCCACAACCACAGTGACACATGGACACTAAC
AAGG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATCAGATATATTGAGGACAGCAAATACTTGAG
ATAATCAGATGGCAGGAGGGAAGCATAAGAACAGAAACTGAGGTTACTTG
GCATCATCAGAACCAAACTCTCCCACCATAGCAAGTCCTGGATACACCAA
CACACCAGAAAAGCAAGACATGGATCTAAAGTCACTTCTTATGATGATGA
TGGAGGATTTTAAGAAGGAAATACAGGAAAACATAGGGAAACAGCTAGAA
GCCTTTAAAGAGGAAACACAAAAATGCCTTAGAGAGTTACAGGAAAACAC
TACCAAATTTTGTATGCACCTCCCCACCCCCAGCCAGGATCTAAAAATGG
AAGTAGAAACAATGAAGAAAACCCAAAAGAAGACAACTCTGGAGGATAGA
AACCCTAGGAAAGAAATCAGGAACCATAGATACTAGCATCAGCAACAGAA
TACAAGAAATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGGGGAC
ATGGACAAAACAATCAAAGAAAATACAAAATGCAAAAAGATCCTAATTCA
AAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACAGATAA
TAGGAGTAGATGAGAAAGAAGATTTTCAACTTAAAGGGCCAGAAAATATC
TTCAACAAAATTATAGAAGAAAACTTTCCATACCTAAAGAAAGAGATGAC
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_j20.b1 MSMg01no272_j20.b1 CHROMAT_FILE:
MSMg01no272_j20.b1 PHD_FILE: MSMg01no272_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:48 2005
         (369 letters)



>mm_chr5_70476325_70477093
          Length = 769

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttttataaaatattattataggacacacatgtgtcgagatgtaaaacattatcactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttttataaaatattattataggacacacatgtgtcgagatgtaaaacattatcactc 260

                                                                       
Query: 61  aagagaatataacatgaataaatgcaactggatgaaggttgcttatagttaaggttttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aagagaatataacatgaataaatgcaactggatgaaggttgcttatagttaagattttag 320

                                                                       
Query: 121 tgctgtgaacagataccatggccaaggcaactcttataaggacaacatttaattgtgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgtgaacagataccatggccaaggcaactcttataaggacaacatttaattgtgtct 380

                                                                       
Query: 181 ggcttacacgtccagagtttcagtccataatcatcaaggtgggaatatggcaccatttag 240
           || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtttacacgtccagagtttcagttcataatcatcaaggtgggaatatggcaccatttag 440

                                                                       
Query: 241 gcagacatggtgcaggagaagctgagagttctacatccttacctgaaggctgctagcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagacatggtgcaggagaagctgagagttctacatccttacctgaaggctgctagcaga 500

                                                                       
Query: 301 atactgacttccaggcagctaggacgaggaccatgaagcccacaaccacagtgacacatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atactgacttccaggcagctaggacgaggaccatgaagcccacaaccacagtgacacatg 560

                    
Query: 361 gacactaac 369
           |||||||||
Sbjct: 561 gacactaac 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)