BAC Information

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BAC

Clone NameMSMg01-272L22
Chromosome5 (Build37)
Map Location 148,823,242 - 148,978,494
singlet/doubletdoublet
Overlap geneC130038G02Rik
Upstream geneLnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3
Downstream geneLOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272L22.T7 (MSMg01no272_l22.b1)MSMg01-272L22.TJ (MSMg01no272_l22.g1)
ACCAG411942AG411943
length664747
length of high quality
(start - end)		250 (72 - 321)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no272_l22.b1 PHD_FILE: MSMg01no272_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:58 2005CHROMAT_FILE: MSMg01no272_l22.g1 PHD_FILE: MSMg01no272_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,823,242 - 148,823,491)(148,978,206 - 148,978,494)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATGCGCGGAAT
TCCACTCATTTTACCCAAATAAGTAATCCTCATAAATTACGTGCATCTAT
CAGAAATGGTGGGGAAATTTACCTTATAACTATTTGAAAACTTGTACCCT
TAAGATTTGATTCACTTCCTGAGGATCCGTGATTGTGAGAGCTACATTCT
TGAGACATCAAGTCAAAAGTCTCACGCTAGTTATTTTCCTACTCCTATGG
AAGCAGGAAACCTCTGTTCTCCATCATGGTAGTCACAGGCAGAGATGTAA
AAGTGAATTGCGTTGGACACAGTATCTCTTTGGTATGTTGATTTCATTTC
CTTAGGCCATATGCTTGTCTTACCCCTCCTATTGCTGTGAAGAGACACTA
TGGGCAAGGCAACTTTTTTTCTTTTTTTGGATAAAAAGGGGTTTCTCTTG
TTATACCCCCAAATTTTCCCGTGGAAATATCCCTTTTTTTTGAAAACAAA
CTGGGGGGGCTCCCCCCCTCTCTCTTTCTAAAAAAAATAATTTTTTGTGT
GTTTTCCCTCTTTTTATTTTTTTTTTTTTTAATAATAAATTTTATGTGTA
TTGTTTTTTATATATTTATCTATCTTGTTTATAGTTCGTCCTTTTTCCAT
TTTTCCCCCCCCTC

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTCAGCTACTTAATACCATCTCTGCTC
TTCACGCCTTGCAGCCCATGCGATTTACTCAGAACCTCTTTTTAATCATC
ATCTTTTAGAATGTGGATTGTGACGCCGTTCACCAACAGAATCTCAGTCT
GGATTGTGTCATTGCAAAGGCAGATGGGAGCAGAGGTGAAAGGTCACAGA
AGGGCTCCAAGCAATAGGGCAACATTAGGGCAACATCACCTAACCTGGAA
AATTACTACTGTTATTCATGCCTGGGAACTGACTGGCATGGCAAAGTATG
ATCTACTTGCTGTTTTTTTCTTGCCCCCGCCCCTGTGACAACTACAAATT
AAAAATATAAATAGAGTGCATAGGAGTCATCTTCTACGTAAGGACAGAAT
TGAGAACCAGAATTGAGACAGAACATATGGATGAGGCAAGACTTGAATCC
AGGACCCTTTAGGCTCTTTGTGTGTGTGTGTTGGTGATGAGGGGCGGTTA
CAGGGGACAGGGACTCTCTGTGCTCTGCTGTTCAAGGCAGGCAGTGAGAC
CCAAGCAGCTCTTTCCCTCTTACCTGGCTTCCTGAATGCTATAGACACGG
TGACCAGGAGCCATAGCCCCATAGCTGCTCTCTCCTATGCTAATACATTC
TGGTGCCATGAGTGAATGAGTGGAAGTGTTTCATGGAACAGGAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_l22.b1 MSMg01no272_l22.b1 CHROMAT_FILE:
MSMg01no272_l22.b1 PHD_FILE: MSMg01no272_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:58 2005
         (250 letters)



>mm_chr5_148823042_148823691
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaatcctcataaattacgtgcatctatcagaaatggtggggaaatttaccttataact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agtaatcctcataaattacgtgcatctatcagaaatggtggggaaatttactttataact 260

                                                                       
Query: 61  atttgaaaacttgtacccttaagatttgattcacttcctgaggatccgtgattgtgagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgaaaacttgtacccttaagatttgattcacttcctgaggatccgtgattgtgagag 320

                                                                       
Query: 121 ctacattcttgagacatcaagtcaaaagtctcacgctagttattttcctactcctatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacattcttgagacatcaagtcaaaagtctcacgctagttattttcctactcctatgga 380

                                                                       
Query: 181 agcaggaaacctctgttctccatcatggtagtcacaggcagagatgtaaaagtgaattgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaggaaacctctgttctccatcatggtagtcacaggcagagatgtaaaagtgaattgc 440

                     
Query: 241 gttggacaca 250
           ||||||||||
Sbjct: 441 gttggacaca 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no272_l22.g1 MSMg01no272_l22.g1 CHROMAT_FILE:
MSMg01no272_l22.g1 PHD_FILE: MSMg01no272_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:58 2005
         (289 letters)



>mm_chr5_148978006_148978694
          Length = 689

 Score =  489 bits (253), Expect = e-143
 Identities = 280/289 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttcagctacttaataccatctctgctcttcacgccttgcagcccatgcgatttactca 60
           |||||||||||||||||||||||||||| || || ||||||||| |||| ||||||||||
Sbjct: 489 acttcagctacttaataccatctctgctgtttacaccttgcagctcatgtgatttactca 430

                                                                       
Query: 61  gaacctctttttaatcatcatcttttagaatgtggattgtgacgccgttcaccaacagaa 120
           ||||||||||||||| ||||||||||||| | |||||||||| |||||||||||||||||
Sbjct: 429 gaacctctttttaattatcatcttttagagtatggattgtgatgccgttcaccaacagaa 370

                                                                       
Query: 121 tctcagtctggattgtgtcattgcaaaggcagatgggagcagaggtgaaaggtcacagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tctcagtctggattgtgtcattgcaaaggcagatgggagcagaggtgaaaggtcacagaa 310

                                                                       
Query: 181 gggctccaagcaatagggcaacattagggcaacatcacctaacctggaaaattactactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gggctccaagcaatagggcaacattagggcaacatcacctaacctggaaaattactactg 250

                                                            
Query: 241 ttattcatgcctgggaactgactggcatggcaaagtatgatctacttgc 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttattcatgcctgggaactgactggcatggcaaagtatgatctacttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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