BAC Information

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BAC

Clone NameMSMg01-273B20
Chromosome5 (Build37)
Map Location 59,616,321 - 59,616,640
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870
Downstream geneLOC100041425, LOC546866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273B20.T7 (MSMg01no273_b20.b1)MSMg01-273B20.TJ (MSMg01no273_b20.g1)
ACCAG412206AG412207
length732746
length of high quality
(start - end)
320 (41 - 360)136 (72 - 207)
definitionCHROMAT_FILE: MSMg01no273_b20.b1 PHD_FILE: MSMg01no273_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:26 2005CHROMAT_FILE: MSMg01no273_b20.g1 PHD_FILE: MSMg01no273_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTGTACAACAGCCAGATTTAGCAGCTCACATCTGTAACTCTAATATTTGA
AAGGCAGAAATGTATAGATTCCCAATGTTCATTGTCCTGTGATCCTAGGC
TAGTGAATGAATTCTGGGCAGATAAGATGAAAATTGTTATTCTTTTCTTG
ATCTCAATGATAAGGTTTTTAGGATTTTTTTCCATTTAAAATGGTACAAC
TTTTTGAGTTCTGTGAGCTGTATCTTGGGTATTTGACATTTTTTGGCTAA
TATCCAGTTATTAGTGAATACATACTATGCATGCCCTTTTGTGTCTGAGT
TAGTTCACTTTTTATATCCCCCCCCCCTCCATCCATTTACCAACTCTGAC
CCATAATTGTCCCTGTCGGAAAAAACTGCAAGAATGGTAATGGAGAAGAT
CCTGAGGAAAACAAGGACCAGTGACAGACTCAAAGTAGGATACAGCTTAA
TGGGATGTTCTAAGGCCTGACACTATTACAAAAGCTATGAAGGGCATACA
TAAAGGTACCTATCATGATTTCTCTCTGANAGACCCAACAAGCAGCTGAA
AGATTCAGATGCAGATACTTGTACAACTAATGGACAGAAGGTGCTGAACC
CTGAGGTTGAATTAGGGGAAAGCAGGAAGAAGCTGAGGAGGAGGGCGACC
CTACAGGAAGGCCAGCAGTCTCAACTGACCTG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTACTACTTCTCCAACTCCCCATCATCTC
TCAGACTTCTTTATAAATTTTTACCCTCTACTTATTTAATGATTTTTGTT
ATATATATATATATATATATATATATATATATATATATATATATATGTGT
GTGTGTGNGNGNNNNNNNNNGGGNGNNTGNNGNNGGGGGGGGGGGGGGGG
GTTTTTGGGTGGGTGGGGGGTTTGGGTGGGGTTGGGGGTGTGTTGTGGGG
TGTGGTGTGGGGTTTTTTTTTTTTGTGGGGGGGGGGGGGGGGGGGGGGGG
TTTTTTTGGTGGTTCCNNNACCGGGTCCCTGGGGTGGGGTGNNGNNNNNG
GGGGGGGGNNNGGGGAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGGGN
NNNNNNNNNNNNNNNNNNNNNNNANNNNNGNNANANAANNAANAAAAAAG
AAGGAAGAAGAAGGGAGAGGAGGGGGGGAAAGGAGGGGGGGGAGAGAGGA
GGGGAAAGGAGAAGAGGAGGAAGGAAAGGGAAGGGGAGGAAGGNGAGGGA
GAAGAAAAAAGAGAGAAAGAGAAGGGAGAAAGAGGGGGGAAGAAAGGAAG
AGGGGGGGGAAAAAAGGGAGATTAAAAAAAATATTAAAGTTTTATAAGGA
TTTGTTAGGTAGTGTGTTTAGTATAGTAAATGGTTTTTAGTTAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_b20.b1 MSMg01no273_b20.b1 CHROMAT_FILE:
MSMg01no273_b20.b1 PHD_FILE: MSMg01no273_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:26 2005
         (320 letters)



>mm_chr5_59616117_59616836
          Length = 720

 Score =  549 bits (284), Expect = e-161
 Identities = 309/320 (96%), Gaps = 5/320 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtacaacagccagatttagcagctcacatctgtaactctaatatttgaaagg 64
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcttgtaaaacagccagatttagcagctcacatctgtaattctaatatttgaaagg 264

                                                                       
Query: 65  cagaaatgtatagattcccaatgttcattgtcctgtgatcctaggctagtgaatgaattc 124
           ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 265 cagaaatatatagattcccaatggtcattttcctgtgatcctaggctagtgaatgaattc 324

                                                                       
Query: 125 tgggcagataagatgaaaattgttattcttttcttgatctcaatgataaggtttttagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggcagataagatgaaaattgttattcttttcttgatctcaatgataaggtttttagga 384

                                                                       
Query: 185 tttttttc-----catttaaaatggtacaactttttgagttctgtgagctgtatcttggg 239
           |||||||      |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttttttttttcatttaaaatggtacaactttttgagttctgtgagctgtatcttggg 444

                                                                       
Query: 240 tatttgacattttttggctaatatccagttattagtgaatacatactatgcatgcccttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatttgacattttttggctaatatccagttattagtgaatacatactatgcatgcccttt 504

                               
Query: 300 tgtgtctgagttagttcact 319
           ||||||||||||||||||||
Sbjct: 505 tgtgtctgagttagttcact 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)