BAC Information

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BAC

Clone NameMSMg01-273F10
Chromosome5 (Build37)
Map Location 133,091,905 - 133,092,216
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2, 4930563F08Rik
Downstream geneLOC100039731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273F10.T7 (MSMg01no273_f10.b1)MSMg01-273F10.TJ (MSMg01no273_f10.g1)
ACCAG412368AG412369
length748727
length of high quality
(start - end)
316 (40 - 355)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no273_f10.b1 PHD_FILE: MSMg01no273_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:41 2005CHROMAT_FILE: MSMg01no273_f10.g1 PHD_FILE: MSMg01no273_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AACTCATTTCTGGAGTACTCTACCTCCTGCTCCCAGCTCATGCATAATCC
ATCTCTCCATTAAATTTTACCAATAAAGCACGCGACCTATGGGTTGTAGA
TGAGACTCAGTTGGGAGAGGGCTCACCTAGCATACACAAACTCATGGGTT
TGATCCCAGCAGCACACAAACTGATTATGGTAACACATGATGTCATACCG
TACCCTGCTTCTCTGCTTGGGGTGCCTGGAGTGGCACCTGCATGCCACCA
GAAGAAGGCAGGGCCAAGTCCAACGTGGGGAGTTCACAGTGGTTCCTGGT
CACTTCTCTTGTTACTGCCCCCGCCCCGCCAAAGCACTGTGAGAGGGAAT
TGGGAACTGAGGATCCACAGGACAGAATGTCAAGCATAGAGGGGAAAGGT
GGAGAACGTTGGTGGATGCTGGTTTGATTCAGAGTCGGTGCTGAGAGTGC
TGGTGGCTGAAGGAGAGACCTTCCTCCGGAGTTCTGGGCACAGTTCTTTA
AAGTCTTTCCTGGTGGGGATCCCTTATTTAAGAAACAATCCTTGCTTATT
CTTATTAATGGAATTTTGATGGTGAATATGTAATCCTAACCCTTTTATTC
CTGGTTGAACCATGAATTTCATTGGCCCTTTTTCAGTAAAGGTAATGCCC
CACACACGGCGAAGCCTCTTTTGGCTCGGCATACATCTGGGCGGGCTA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACACAGTATTACCTTTGACCAGAGAAACTC
ATTCACAGCCCATGAAACCCTAGAGGCATGCTACCTGCTAGCTTGCTCAG
ACTCATTCTAGGACCACATACTTAGGTACTGGGCCCTCCCAATACCAATA
AGCAATTAAAAAAAAAGAAAGAAAGAAAAACCCACAGACATGCTCACAGG
CAAGAATGATCTGGAAAATCTCTCAATTGAGACTCCCTTCTCAGGGGACT
GTGTCAAGTTAACAATTAAGCTAACTAGATGACTCCTGGTATATGCATAA
AATTTTGTTTTTTTTATCTCCCGCCCCCCGCTCATCATATAAACAGCGGA
TCTAATGTGATAGCTCATCATATAAACAGAAAAACCCTGAACTGGGAACA
AGGCCGGGTATGACTGCACATACCTTCACTCCTAGCACTTGGAAGGCAGA
GGCAGGTAGATCTATGACTGTAAAGCCAGCCTGGTCTACACAGATAATGG
TTCTTCCTTTGTCCTCTTTTGGTTCTCTACATATCTGAGAACTTTATTGC
TATAATCTACTTACATGTCTCTCTCCTGCACTGGACAGCTAGTTTCTGTA
CTCCAACACCCTTTTCCACTCTTTCCTTGCATTATTAACGGGCAGCCCTA
AAAACATCACACCCACCCCCCCCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_f10.b1 MSMg01no273_f10.b1 CHROMAT_FILE:
MSMg01no273_f10.b1 PHD_FILE: MSMg01no273_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:41 2005
         (316 letters)



>mm_chr5_133091505_133092220
          Length = 716

 Score =  542 bits (280), Expect = e-158
 Identities = 304/312 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaactcatttctggagtactctacctcctgctcccagctcatgcataatccatc 64
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 712 gaattccaactcatttctggagtattctacctcctgctcccagctcatgcataagccgtc 653

                                                                       
Query: 65  tctccattaaattttaccaataaagcacgcgacctatgggttgtagatgagactcagttg 124
           ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 652 tctccattaaattttaccaataaagcacgggacctatgggttgtggatgagactcagttg 593

                                                                       
Query: 125 ggagagggctcacctagcatacacaaactcatgggtttgatcccagcagcacacaaactg 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 592 ggagagggctcacctagcatacacaaactcgtgggtttgatcccagcagcacataaactg 533

                                                                       
Query: 185 attatggtaacacatgatgtcataccgtaccctgcttctctgcttggggtgcctggagtg 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 532 attatggtaacacatgatgtcataccgcaccctgcttctctgcttggggtgcctggagtg 473

                                                                       
Query: 245 gcacctgcatgccaccagaagaaggcagggccaagtccaacgtggggagttcacagtggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gcacctgcatgccaccagaagaaggcagggccaagtccaacgtggggagttcacagtggt 413

                       
Query: 305 tcctggtcactt 316
           ||||||||||||
Sbjct: 412 tcctggtcactt 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)