BAC Information

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BAC

Clone NameMSMg01-273G07
Chromosome5 (Build37)
Map Location 107,136,870 - 107,137,151
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400
Downstream geneEG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273G07.T7 (MSMg01no273_g07.b1)MSMg01-273G07.TJ (MSMg01no273_g07.g1)
ACCAG412406AG412407
length721722
length of high quality
(start - end)
313 (44 - 356)282 (73 - 354)
definitionCHROMAT_FILE: MSMg01no273_g07.b1 PHD_FILE: MSMg01no273_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:45 2005CHROMAT_FILE: MSMg01no273_g07.g1 PHD_FILE: MSMg01no273_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGAAAAGATGACAAAGAGCCCAGGAGAAGCCAGGGACTGTAATAAT
TCTCACATAATAACATTAAACTCTAATTTAGGACGTGGTAACAGGTTTGT
GCTGGATTTCAGAGTGGATGGGCTAATGGCTTTTGTGGTCTCCTGTTTTC
TCTTTCTCAACAATGTATTCCAGGAGTGTCATCCAGACCCACAGCTGTAT
GGAGGTGAGGAGAGAGAACCGGTTTAGTTCATAGGTCTTCAGTTGACTTG
TTTCTGTTTGGAGGGCACCCTCTGCGCTTGACTCAAGACGATACATTCTT
TGAGTCTGTATTCTGATCGCCCCCCCTCCGTAGCGTCTTAGGGGAGGTGT
AGGGGGCAATGCGTGTATTTGGGATGTAATTGCCTTCAAGGCTTTGATAT
GAGCCCCTCCCTTTGTATACGGACCAACCTCAATGACTGACTTCTAATGC
AGAATAAGACAGAACACCAGTGTTCTATAGGACAGGTGTGGAGCAGCTTC
TAACTGGTCCTGACCCTTGGGGCGCTTGGCTCTTGGAACCTAGCAGTGAT
AACAGGAATCTTGGGATGCTGGAAGGGTGATGTGAAAGTGTTCAAACAGT
TTTAGCTATCATCCCCGCTAACATGTACCACCAACTGCCAAACAGAGTGA
ATGGGTCTGCAGACAGTCCCA
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTGCAGCTATGCAGGCCTGCTCCAG
CCACGTCACTAACCTCACAGCAGAATGATTTCATACTTTCTGAAATTGAA
TTCCTGGAGCCCTTTTTATTTTTCAAGTACTGTGGGACTGAGTGTCACAT
GAGGAGAGTAAATGTAACGAGAAGCACAGAATGCAGTGTGAGGCCGAGGA
AAGCCTCTCTGAGGGAGGGATGTTCTGTTGAAATGGTGGGCCCTAATGCT
TCATATGCAAGCATTTATAGAATAGTGTATGAAAAGAAATGCTCAGAATA
AGGGTCTTTTTCTGGCTCCCCCCCCGCAGCTGAGGCTGTGCAGGTTCCTG
GCAAACAGTGATGGCACTGTTCTAGTGATGCAGGGGAGTTCCAGGGAAGG
GTCACAGTGGCTATTGTATAGTGCCTGCAGGGGTGGGATAAGATAATTAA
CAGGACCTGTTTCTATTGTGTCTTAAGAGACTGAGAGGGGAGCGGTGGTG
GCATAAGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCT
GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC
TACACAGAGAAACTCTGTCTTAAACATAACAACTCATACACTTACACATA
CTCACAGACCCACAGACACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_g07.g1 MSMg01no273_g07.g1 CHROMAT_FILE:
MSMg01no273_g07.g1 PHD_FILE: MSMg01no273_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:45 2005
         (282 letters)



>mm_chr5_107136670_107137351
          Length = 682

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgcagctatgcaggcctgctccagccacgtcactaacctcacagcagaatgatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 actttgcagctatgcaggcctgctccagccacgtcactaacctcacagcagaatgatttc 423

                                                                       
Query: 61  atactttctgaaattgaattcctggagccctttttatttttcaagtactgtgggactgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atactttctgaaattgaattcctggagccctttttatttttcaagtactgtgggactgag 363

                                                                       
Query: 121 tgtcacatgaggagagtaaatgtaacgagaagcacagaatgcagtgtgaggccgaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgtcacatgaggagagtaaatgtaacgagaagcacagaatgcagtgtgaggccgaggaaa 303

                                                                       
Query: 181 gcctctctgagggagggatgttctgttgaaatggtgggccctaatgcttcatatgcaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gcctctctgagggagggatgttctgttgaaatggtgggccctaatgcttcatatgcaagc 243

                                                     
Query: 241 atttatagaatagtgtatgaaaagaaatgctcagaataaggg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atttatagaatagtgtatgaaaagaaatgctcagaataaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)