BAC Information

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BAC

Clone NameMSMg01-273G18
Chromosome5 (Build37)
Map Location 104,615,907 - 104,616,195
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk10, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp
Downstream geneDmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273G18.T7 (MSMg01no273_g18.b1)MSMg01-273G18.TJ (MSMg01no273_g18.g1)
ACCAG412428
length748745
length of high quality
(start - end)
---293 (65 - 357)
definitionCHROMAT_FILE: MSMg01no273_g18.b1 PHD_FILE: MSMg01no273_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:47 2005CHROMAT_FILE: MSMg01no273_g18.g1 PHD_FILE: MSMg01no273_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTGGGAAATTAAGCTATCTTCTCAGTTGCATACAT
AAGCTGTTCCCTGTATGCCCAAAGACACAAGTCGTAAAACAGTCCATCAC
AGCTTGTCCCTCCCTACTAGACCTGGTAATGCCTCCTATACCTGGTCAGA
ACATTGGTTAGGAAACAGTGAGGGTTTTCTGTTGTGATAGTTGATACTTT
CATTTCAAAATCTAGTTCCCACACAGCAAGATATCATTTAGAAAAGTCAT
ACTTCATCGTATAAATACATTTACAACTATTAACCAGACTGGAATTTCCC
AGACTTTTTTTTTGCTCCCCCCCCGCCATGGAAGTTTTGAAAAGCCATAG
ACCAAAATAACCAGGAACAATTTTCCTCTCCCTAAAAGGAGCAGAAACAG
AATAGATTTGAACAGTCACAGATGAAAAACACCATCGTGGTCTCCCAGGG
TTCTGTTCTCGACTGCTTGGGAGCAAATCCTCCAGGGAAGGAAACAAATC
CTACAATGTTCCCTGAAAAAAGGTCCCAAGCTTCTAACGCCAGGAGAGGG
GGGAGAGAGGAGCAGGCAGTGCCTGTGTGCAGTCACACACCCAGGCCACT
AGTTCAAAGTCTAAATGCTTTTCCTCTGAATGTTTTCTCTGTTGTTTATA
AGCCATTCAGTCTATGATACTTTACTATAGCAACCAAGACTAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_g18.g1 MSMg01no273_g18.g1 CHROMAT_FILE:
MSMg01no273_g18.g1 PHD_FILE: MSMg01no273_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:48 2005
         (293 letters)



>mm_chr5_104615706_104616398
          Length = 693

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttgggaaattaagctatcttctcagttgcatacataagctgttccctgtatgcccaaaga 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 202 ttgggaaattaagctatcttctcagttgcatacataagctgttccctgtatgaccaaaga 261

                                                                       
Query: 62  cacaagtcgtaaaacagtccatcacagcttgtccctccctactagacctggtaatgcctc 121
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 262 cacaagtcgtaaaacagtccatcacagattgtccctccctactagacctggtaattcctc 321

                                                                       
Query: 122 ctatacctggtcagaacattggttaggaaacagtgagggttttctgttgtgatagttgat 181
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctatacttggtcagaacattggttaggaaacagtgagggttttctgttgtgatagttgat 381

                                                                       
Query: 182 actttcatttcaaaatctagttcccacacagcaagatatcatttagaaaagtcatacttc 241
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 382 actttcatttcaaaatctagttcccacacagcaggatagcatttagaaaagtcatacttc 441

                                                            
Query: 242 atcgtataaatacatttacaactattaaccagactggaatttcccagac 290
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atcgtataaatacatttacaactattaaccagactggaatttcccagac 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)