BAC Information

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BAC

Clone NameMSMg01-273K21
Chromosome5 (Build37)
Map Location 128,677,890 - 128,678,227
singlet/doubletsinglet
Overlap geneTmem132d
Upstream geneTmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441, Gpr133, LOC100039355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273K21.T7 (MSMg01no273_k21.b1)MSMg01-273K21.TJ (MSMg01no273_k21.g1)
ACCAG412616AG412617
length724746
length of high quality
(start - end)
338 (381 - 718)239 (120 - 358)
definitionCHROMAT_FILE: MSMg01no273_k21.b1 PHD_FILE: MSMg01no273_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:06 2005CHROMAT_FILE: MSMg01no273_k21.g1 PHD_FILE: MSMg01no273_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCATTTCTGTGAAGCAATAAATTCTCCATTTTAAAAAAATTCTGCTTGAG
TGGGGTTCTGTCAGCATCAACATATTCACCTCAAATAGATTCTTGGTGAG
TAGATTAGCAATGCTTGTATTGTATTTGTTTAAATATTTGGCTTCAGTGT
GTATATGTGTGTCCGAGAGCATGTGCGTGCAAGTACCTGCAATGGAGGCA
AGAAGAGGGTATCAGATCCCCTGGAGCTGCCTGTGGATAGTGAGAGACAA
ACCCCGGTCCTCTGTTAGAGCAGCATATATTCAACCCCTGAGCCATCTCT
CTAGCCACATATTTGTTTGCTTCCACCATATGAGACATAAATAATAACAA
GCACTGGGCTCCGAATGACAGAAATTCAAAATACCTGTGGCTATATGTAG
TCAGCATACACAAACCCCCTTCAAGTCAAATAAAGATAGATTTAGATCCA
AAACGATTGCTAACACCACAAATCTCTTTCATTAGTCATAATTCATAAGC
CCTCCCTCTGAACCCCTTGCATTTTAACCACAGTGTCATTGCTAACAAAA
ATGCTCACATTGGGAGCCAGTAGAGGTCATGGATTCTATAACTCACCGAC
TTTCACTGGCCTCCTGTCATTGGTTTTTCATTATTACCTGAGTTCGACCA
CAACTGGTGAGGTTTAAACAGGGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGCTACATATGTGTGAGCTACACAGCAAGAGCC
TGTTTCCAAATTCTACCCGACATAGGGCAGGAGAGACAGCTCAAGAAAAC
AACACTGGATACTCTTGCAGAGGACCCAGGTTCACTTCATAGCATCCATG
TGGTAGCTCAAAAGTATGTGTAATTCTAGTTCCAGAGGATCTGACACCTT
CTTCTGGCCTCCATGAACATCAGGCATAAATGTCGTACACAGACATATAT
GCAGGGCAAACAACCATATAGAATAAACAGACAAACAGATAAACAAATAG
GAAAGCATAATAATTCTCCCCCCGCACCCTCAAAAACTCTTAGAGGCAGT
AAAATCTGTCAGATGCAGGCTCTAAAATACATAAGGGCAAAGGAGAGAGA
CTAATCCATCAATTCTGCCTTGGGCTTTGTTATTGGTGCTCAGTGTGTGT
GTGTTGCATGCACATGAGTGTGCAAACACACAACATCATATGCATGCATG
AAGAGGTCAGAACAGAATATTGGATGTCTCCCTCATATCCTTCTTTACCT
TATTACCTTGAGAAAAGCTCACTGTTTTCATTGGCTTTCTGTCCTATGAG
TTCTTGATAGCTGCCTATCTCCCATCCCTACCAATGCCAGGTTACAGATA
GGCTCCTCTGTGTGCAGCTTCTTACACGGGTACTGAAGATTCTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_k21.b1 MSMg01no273_k21.b1 CHROMAT_FILE:
MSMg01no273_k21.b1 PHD_FILE: MSMg01no273_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:06 2005
         (338 letters)



>mm_chr5_128677690_128678427
          Length = 738

 Score =  646 bits (334), Expect = 0.0
 Identities = 337/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagacataaataataacaagcactgggctccgaatgacagaaattcaaaatacctgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagacataaataataacaagcactgggctccgaatgacagaaattcaaaatacctgtgg 260

                                                                       
Query: 61  ctatatgtagtcagcatacacaaacccccttcaagtcaaataaagatagatttagatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatatgtagtcagcatacacaaacccccttcaagtcaaataaagatagatttagatcca 320

                                                                       
Query: 121 aaacgattgctaacaccacaaatctctttcattagtcataattcataagccctccctctg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacggttgctaacaccacaaatctctttcattagtcataattcataagccctccctctg 380

                                                                       
Query: 181 aaccccttgcattttaaccacagtgtcattgctaacaaaaatgctcacattgggagccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccccttgcattttaaccacagtgtcattgctaacaaaaatgctcacattgggagccag 440

                                                                       
Query: 241 tagaggtcatggattctataactcaccgactttcactggcctcctgtcattggtttttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaggtcatggattctataactcaccgactttcactggcctcctgtcattggtttttca 500

                                                 
Query: 301 ttattacctgagttcgaccacaactggtgaggtttaaa 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttattacctgagttcgaccacaactggtgaggtttaaa 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)