BAC Information

Click to search

BAC

Clone NameMSMg01-273O08
Chromosome5 (Build37)
Map Location 133,649,460 - 133,829,120
singlet/doubletdoublet
Overlap genenone
Upstream geneAuts2
Downstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273O08.T7 (MSMg01no273_o08.b1)MSMg01-273O08.TJ (MSMg01no273_o08.g1)
ACCAG412778AG412779
length748730
length of high quality
(start - end)		318 (41 - 358)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no273_o08.b1 PHD_FILE: MSMg01no273_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:21 2005CHROMAT_FILE: MSMg01no273_o08.g1 PHD_FILE: MSMg01no273_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,649,460 - 133,649,771)(133,828,835 - 133,829,120)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAAGCCACTCTATTCTGTGCTGAAACTTGCTCAATTTTGGCACAGCATA
GACGAGCCTAGCTCAGAGTTTGCTTTGCACAGGGTAACTTGGCACCGAGT
CCGGGAAAGAGGTAAATTTTAAGTCGCTGGTGCCAACTGGGTGCAGGAAC
AAGTCAGAAACAGAAAGCACACATCTTCATATGCCAGCTGCTGAGACGCG
AGGAAAACCCAAAACCTACCCGGGAAACATCTTTTCAACTAGCCATTTTT
ATTTGTGTGTGCACTCAATGCATTCGTGCATATGAGTGTGCACATAGGTG
TGTGTTTATTTGTCCCCCCCCACCTGTGTTTGTGCAGATGTGTATGTGTG
TATGTAAGTCGCGCTGAAATAAAACCCAGAGCTTTATGAATGCTAAATGT
GTTCTTTTAGAATTAATGTAATGATTTTCGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTTCCTTCCCCTCTATCTGATCCGCTTTACCGCTC
TCCCTGCTTCCCGCTATCCCTCATTTATTTTACCTTGCTTGCATTTTACA
ATTCCATTTTTATGTACCGCTTGGCTCTTCCTTTTCATCCCTACCTATAC
CTCCCTATTTTATTCCTTCTCCTTTTCATTTACCTTCCCCTCGTTCCTCT
TCTATTGCTTTTTTCTCCTTTTTTCCATTTTTTTCCTTTTCTACCCTT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCCCCAGTAGGACAATGATTCCCTCAT
CTTAGCTCTGCAAGGCCTCTATTTTATGGGATCTTGGAGGCTCAAAGCAG
CTATCTACCATCCAAATCAGCCTGCACTTTTGTCTTCAGTGGACGATCCC
CAACCCCCTTTCAAACAAGCATTATTGCAACCATTTTATAAAACCCAGAC
AGAAAGAGCTCCCCAATGTCTCTTTCGAGTAGCTTGGTGTGGCAATCTTG
TCACCAGGCCACATAGAAGTGCCTCTTGCCCTCTTCATTACTGATTTCCA
ACTTGTGTTATGATCCCCCCCCCAGAAGGACAAAGATCCCAGTGCCTATG
AATTATAATTCACACCAGAAGAAAGACTGATATGGCAGGCTAATAAATGA
TTCTCTGAGATATAAGCAAAATTCATAGCTGTTTCCTTGCATGGAATGAA
GGTATAGACATGACTAAGCTAAGAGTCTTGGTATGGGAAGATAGTGCTGG
GATAATCAGGTGGACCTGACCACACAGTCACATTTATTTTTAAAAGAGAA
AAACAGCTATAATTCCAACATAGGGAGAAGAAGGGTACAGGGCACCACCC
CTTACAGAAGAGTGGGTAGCTCCTGAGGGAAGGACAATCATTCTTTTTTG
GGAGTGGGGAAACTGGTTTGTCATCCATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_o08.b1 MSMg01no273_o08.b1 CHROMAT_FILE:
MSMg01no273_o08.b1 PHD_FILE: MSMg01no273_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:21 2005
         (318 letters)



>mm_chr5_133649257_133649974
          Length = 718

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaaagccactctattctgtgctgaaacttgctcaattttggcacagcatagac 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 204 ggaattccaaagccactttattctgtgctgaaacttgctcaattttggcacagcatagat 263

                                                                       
Query: 64  gagcctagctcagagtttgctttgcacagggtaacttggcaccgagtccgggaaagaggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagcctagctcagagtttgctttgcacagggtaacttggcaccgagtccgggaaagaggt 323

                                                                       
Query: 124 aaattttaagtcgctggtgccaactgggtgcaggaacaagtcagaaacagaaagcacaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaattttaagtcgctggtgccaactgggtgcaggaacaagtcagaaacagaaagcacaca 383

                                                                       
Query: 184 tcttcatatgccagctgctgagacgcgaggaaaacccaaaacctacccgggaaacatctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttcatatgccagctgctgagacgcgaggaaaacccaaaacctacccgggaaacatctt 443

                                                                       
Query: 244 ttcaactagccatttttatttgtgtgtgcactcaatgcattcgtgcatatgagtgtgcac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcaactagccatttttatttgtgtgtgcactcaatgcattcgtgcatatgagtgtgcac 503

                       
Query: 304 ataggtgtgtgt 315
           ||||||||||||
Sbjct: 504 ataggtgtgtgt 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no273_o08.g1 MSMg01no273_o08.g1 CHROMAT_FILE:
MSMg01no273_o08.g1 PHD_FILE: MSMg01no273_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:21 2005
         (286 letters)



>mm_chr5_133828635_133829320
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccccagtaggacaatgattccctcatcttagctctgcaaggcctctattttatggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttccccagtaggacaatgattccctcatcttagctctgcaaggcctctattttatggga 427

                                                                       
Query: 61  tcttggaggctcaaagcagctatctaccatccaaatcagcctgcacttttgtcttcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcttggaggctcaaagcagctatctaccatccaaatcagcctgcacttttgtcttcagtg 367

                                                                       
Query: 121 gacgatccccaaccccctttcaaacaagcattattgcaaccattttataaaacccagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gacgatccccaaccccctttcaaacaagcattattgcaaccattttataaaacccagaca 307

                                                                       
Query: 181 gaaagagctccccaatgtctctttcgagtagcttggtgtggcaatcttgtcaccaggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaaagagctccccaatgtctctttcgagtagcttggtgtggcaatcttgtcaccaggcca 247

                                                         
Query: 241 catagaagtgcctcttgccctcttcattactgatttccaacttgtg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 catagaagtgcctcttgccctcttcattactgatttccaacttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |