BAC Information

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BAC

Clone NameMSMg01-274B11
Chromosome5 (Build37)
Map Location 14,323,532 - 14,323,633
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274B11.T7 (MSMg01no274_b11.b1)MSMg01-274B11.TJ (MSMg01no274_b11.g1)
ACCAG412917AG412918
length823733
length of high quality
(start - end)
---102 (162 - 263)
definitionCHROMAT_FILE: MSMg01no274_b11.b1 PHD_FILE: MSMg01no274_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:35 2005CHROMAT_FILE: MSMg01no274_b11.g1 PHD_FILE: MSMg01no274_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGAAAAAAATCCTTTTTTCAAGAAGGGGGGAATTTTTGTTTTTCCC
AAAAAGAGGTTTGGGGGGGCGGGGGTCCCCCTTTCCGAAGGGGTTTTGGG
CCCCAAACAAATTTTTTTTGTTGGTTAAGTTATTTTGATTTTCCCGGCGC
GGGAAAAATAAAAAATAAACTGGGGTTATATTTTTAGAAATAAGTGTATG
TAATTTAGTAAATAATTTGAATGGTTTGTTGTTTCGAGGTTTCTGTGAAG
GGGGGGGGTGCGTATAGGATTGAATTTTATGAGCGAAGAAGGCAATGATT
ATAATTTTTTTTTTATTTAGCGGCATTGTAAAAAAAAATGGGTGTTAATG
ATTTTTTTTTTTTATTTTTTTCTGCTCCCGTCGTGCGGGGTGATTCTTAG
TTTCCATATTATTCGCGGTTTTCCGAATCATTTTTTTTTTTTTCTGCACT
ACTTGTCTGTTTTTGGCCATCTTTATCGCTTTTTGCTACTGCTTGCTTTT
TGGGGGATATTTTCTTTTGGGGGAGGTTGTGGAGCGCTTTGTCGGTTCAT
ATCCGTCCGTTTTTGGGTAACTTTTCTTTTAGTTCGTACTTTAATATACT
AGTTGTTGTACTCGTCCTTATATCCCTCTTATCATTTACCGCCCTGTATC
TTTTTTGCTGCTCTTTTTGGCCCTTTCCCATTATTACTACCGTTTTAGGC
GGTTTCTTTTTTTCCGGACGGTATTTCTCCCCCGTTACGCGTTTTACGTT
CGTTCCGTATATTTTCTTCCACGTATAGATTTTCTTGTTCCCCGTCGAGC
TTATTTTTGCCGTTTTGTTCGGC
TGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTCTGTCTGGTTTTCTAGCCTATGCTGTAGA
GTCTTAGGAGATTTTGCCCCTCACTTGAAATGAGGGTTGACATATTATCC
GTGTACTGTATCCTTTTTGGCTGGAAAAGGTGCCATCCTGTCCAATGAGC
ATTTGATGATGTGAGGAAAATATATGTCCACTGGGGTCATTCACTTCCCA
TTTCTGCTTTCTACATCACCACGGGGTTCTCTTGGTGGTACAATGTTCTT
TTTTAGTAAGACAATATTGTCACATTCAGTCTCCCTTTCAGAGATTGAAA
GGGTATTTTATTCTCTCCCCTCCTCCTCTCCTTCACTTAATTGATCTATC
CACGGCATACCCGGATGATCTACAATACATCCAGTTAATTCTCTTACCAA
CTTGACATTTGACCACAATCTCATAGATTGTGGACAATACACAAGACGAA
TACTCCTGCTCACTATTTCCGCATTGGTTCTTGACACCATCTGTACCCTC
TTCCTACGCACATATACCCACGATCAAATGTTCTTTTTCTATCCCGAGCT
TATTTCATTCCTCCTTTTAATTCCATGCACATCTGCATGTCCTTCATACC
CGTACTCTCCCTATCCATTATGTACTTTATACTATTATAACATGTATGCG
CTATCATTTACGCCTGTAATCTTCCCAATAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_b11.g1 MSMg01no274_b11.g1 CHROMAT_FILE:
MSMg01no274_b11.g1 PHD_FILE: MSMg01no274_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:35 2005
         (102 letters)



>mm_chr5_14323332_14323833
          Length = 502

 Score =  182 bits (94), Expect = 6e-51
 Identities = 100/102 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctttttggctggaaaaggtgccatcctgtccaatgagcatttgatgatgtgaggaaaat 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 302 cctttttggttggaaaaggtgccatcctgtccaatgagcatttgatgatgtgaggtaaat 243

                                                     
Query: 61  atatgtccactggggtcattcacttcccatttctgctttcta 102
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atatgtccactggggtcattcacttcccatttctgctttcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)