Query= MSMg01no274_i23.b1 MSMg01no274_i23.b1 CHROMAT_FILE:
MSMg01no274_i23.b1 PHD_FILE: MSMg01no274_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:07 2005
(671 letters)
>mm_chr5_87546736_87547809
Length = 1074
Score = 959 bits (496), Expect = 0.0
Identities = 548/567 (96%), Gaps = 3/567 (0%)
Strand = Plus / Minus
Query: 108 tgaaagagatgcagaaacccagagacaaatattagacagagctcagggattctaatggaa 167
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1071 tgaaagagatgcagaaacccagagacaaatattagacagagctcagggattctactggaa 1012
Query: 168 aggaaaagggagggattgaaggacctggagaggacagggactccacaggaagacaaacat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 aggaaaagggagggattgaaggacctggagaggacagggactccacaggaagacaaacat 952
Query: 228 agtcaaccaaagtggactgttgggggctcccagagactggatcaacaaaaaagaatgagc 287
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 951 agtcaaccaaagtggactgttgggggctcccagagactgaatcaaggaaaaagaatgagc 892
Query: 288 atgtgctggacctaggcagatttatggtctcattctacaactattgtctgactactggtg 347
|||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 891 atgtgctggacctatgcagatttgtggtctcattctacaactgttgtctgactactggtg 832
Query: 348 aggagcctataactttcctttagaactgggcctttaaggtgttcagactaattaaatttt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 aggagcctataactttcctttagaactgggcctttaaggtgttcagactaattaaatttt 772
Query: 408 tatgtaacttttggctgcaatgaaatatacaatccatgcttatgatcttgtttgtgtgag 467
|||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 771 tatgtaacttttggctacaatgaaatacacaatccatgcttatgatattgtttgtgtgag 712
Query: 468 aatataggtcctgtaatactttgtaacccttaacctactccttttctcttttgatacccc 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 711 aatataggtcctgtaatactttgtaacccttaacctactccttttctcttttgatatccc 652
Query: 528 aaatttttcattaacaattgagattgtgaacaataggtagta---ttagagttaggaata 584
||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 651 aaatttttcattagcaattgagattgtgaacaataggtaataatattagagttaggaata 592
Query: 585 tgaataatacatctgcattaggatgatgtagaanaggctttttaccaaatattaatcaga 644
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 591 tgaataatacatctgcattaggttgatgtagaaaaggctttttaccaaatattaatcaga 532
Query: 645 atatgaataacagaaggctatgttatt 671
|||||| ||||||||||||||||||||
Sbjct: 531 atatgagtaacagaaggctatgttatt 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1074
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1064
Effective search space: 703304
Effective search space used: 703304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_i23.g1 MSMg01no274_i23.g1 CHROMAT_FILE:
MSMg01no274_i23.g1 PHD_FILE: MSMg01no274_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:07 2005
(648 letters)
>mm_chr5_87400606_87401653
Length = 1048
Score = 1089 bits (563), Expect = 0.0
Identities = 625/647 (96%), Gaps = 3/647 (0%)
Strand = Plus / Plus
Query: 1 tttctgaatagtcaaacttccacagtgaatagttacccccagcctaacaacattttccta 60
||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 201 tttctgaatagtcaatcttccacagtgaatagttacccccagccaaacaagattttccta 260
Query: 61 agatcctccattaggggaagaaaagtttcccaagaattagaatcaaggcaaaacagtgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatcctccattaggggaagaaaagtttcccaagaattagaatcaaggcaaaacagtgta 320
Query: 121 aaaggagcagttggtccatattaagctcaaacttgcttaagatccttaagagtcttaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggagcagttggtccatattaagctcaaacttgcttaagatccttaagagtcttaaat 380
Query: 181 gaaatggatgtactttctctttgccgaaggttattgggatcaggtgcgttcactctctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatggatgtactttctctttgccgaaggttattgggatcaggtgcgttcactctctag 440
Query: 241 gaaaagagaaaatcctcatgtcttttgaaatctcctgggcataaggcagagtctctcgca 300
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 441 gaaaagagaaaatcctcatgtcttctgaaatctcctgggcataaggcagagcctctcgca 500
Query: 301 ctggagacatgtacactgatttagaaggaattaattctcttatggggcatgagaaacctc 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggggacatgtacactgatttagaaggaattaattctcttatggggcatgagaaacctc 560
Query: 361 cttaacattctcggtaagagatggaatggggcagtgaaaaaactctccatgctgtcagaa 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 cttaacattctcggtaagagatggtatggggcagtgaaaaaactctccatgctgtcagaa 620
Query: 421 aatgcatttgatggacaggatttaggagtacaggaaatctaatccggaaatgggggaaca 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 aatgcatttgatggacaggatttaggagtacaggaaatctaatccggagatgggggaaca 680
Query: 481 aaattggtatggagaagaggactcttcaacctcatcacagagacaatagataatagatct 540
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 aaattcgtatggagaaggggactcttcaacctcatcacagagacaatagataatagacct 740
Query: 541 tcagtttctatattttcttttctttcttccttccttccttccttccttccttccttcctt 600
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaggttctatattttcttttcttccttccttccttccttccttccttccttccttcctt 800
Query: 601 ccttacttccttccttccttccttccttccttccttc---cttcctt 644
|||| ||||||||||| ||| ||| ||| |||| ||| |||||||
Sbjct: 801 ccttccttccttcctttctttctttctttcttctttctttcttcctt 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
