BAC Information

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BAC

Clone NameMSMg01-274K16
Chromosome5 (Build37)
Map Location 75,867,857 - 75,868,169
singlet/doubletsinglet
Overlap genenone
Upstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158
Downstream geneLOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274K16.T7 (MSMg01no274_k16.b1)MSMg01-274K16.TJ (MSMg01no274_k16.g1)
ACCAG413331AG413332
length738796
length of high quality
(start - end)
317 (40 - 356)---
definitionCHROMAT_FILE: MSMg01no274_k16.b1 PHD_FILE: MSMg01no274_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:15 2005CHROMAT_FILE: MSMg01no274_k16.g1 PHD_FILE: MSMg01no274_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TCATGTGCTCTTAATCTTGGAAGCTCACACTTACTCTAACAGAGAAATAA
ATTGGGGCAAGGTGACTGGACTCTCCCATAAGGTAATAATAACAAGAGCA
CCTCCTGCCTTGGGTCTATATAACTTGGCAGGCAGCAAGGTCAATAACGG
TTAGTTATGATTGTTCCTTGCTTCTTAGGACTAGGATTTAAAATACTCCA
TTGTTTTTTATTGTTGTTACCCAGTACTAGGGATTAAATGTATAGCCTCA
TGCTTGGAAGACACCCCACGCTATGCCTCAGTTCTCTTTTAACATTGTAT
TTTGAGATCAGGTCTCACCAAGCTGCAAGAACTGGCCTTGAATTCACTCT
ACAACCCAGACAGATCTTGAATGTGTGGTTTTCCTGCCTCAGTCTCCTGA
ATGGTTGAGATTACAGGCCTGGTCTATGAAGCCTTGACAGAAATCCCTTT
CCCTGACTCATGCTAAGTCTTACTAGATCATAACTGACTGGCACATTATT
AGGGTGTGATCTTTGGGATCAGCTATAATACCGCAGAGGTTGCAGCAGAG
AGCCCAGTCTTGCTGTTTTCAAGCAAGAATTTGATGCTCCGTGCGAGGTA
CTCCAATGGGAAGGATTCTGCTTATGTTCAGGCCATTGAGTCTGCCATGG
AAGTCCTGGAGCTAATTTCCCCTTATTATTGAACTTGA
AAGTGGGTAGGACAGGAGGACGCCGGGTCCCAACGCNGGGGGGNGANNNN
NNNNNNGTACCNNCAGGGAGGGNNNGNNNGGNNNNNNNNNNNNNNNNNNN
NNNNCNNGGANTTTTGACCCCAGNGGGCCGGGGGGGGGGNGAGGAGAGAA
GGAGAGGAAAGAGGGAGAAGGGAGGGGGAGAGAGAAAGGGGGGAAAAGAG
AAAGAAGGGGGAAGAGAAGGAGGGGGAAGGGAAGGGGACAAGGGAGTTTT
TTTTTGGATAAAAAAATGGATAGAAAGGGGGAGGTGATTAAGAATGATAA
GGAGAAGGAGGGTTTTGGGTGGGTTGNAAAGAAAAGGGAGAGGAGAGAGG
GAGTTTTAGGTTGCTTCCCCAAACAAACCCCCCAGGGANGGGAAGGGGGG
GGGGGGGGGGGGGGGGGGAAAAAAAAAAAAANNNAAAAGGGNNNNNGGGG
NNNGGGGNNNNNNNNNNNNNNNNNNNNNNNNGNGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGNGGGNGGAGNGGGGGGGGGGGGGGGGGGGGGGGGG
GGGNGGGGGGGGGGGAGGGAGGGGGAGGGAGGGAGGAGGGGGAGGAGAGG
GGGAAGAGAGGGGGGAGGAGGGGAGAGAGGGAGGGGGAGAGAGGGGGGGA
AGAGGAAAAAAGGGAGGGGAGAGGGAGAGGTTTTTTTTTTTGTTTGTGGG
AAGAGGGGGAGGGGAGAGGGTGGGTGAGAGTGGAGGGTGGGGGTGAGAAT
TAGGTATAGGAGGAGGGGAAGGAGAGAGGTTTGGGTGAGGGGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_k16.b1 MSMg01no274_k16.b1 CHROMAT_FILE:
MSMg01no274_k16.b1 PHD_FILE: MSMg01no274_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:15 2005
         (317 letters)



>mm_chr5_75867653_75868369
          Length = 717

 Score =  530 bits (274), Expect = e-155
 Identities = 304/314 (96%), Gaps = 2/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcatgtgctcttaatcttggaagctcacacttactctaacagagaaataaatt 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcatggggtcttaatcttggaagctcacacttactctaacagagaaataaatt 264

                                                                       
Query: 65  ggggca-aggtgactggactctcccataaggtaataataacaagagcacctcctgccttg 123
           |||||| || |||||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 265 ggggcacag-tgactggattctcccataaggtaataataacaagagtacctcctgccctg 323

                                                                       
Query: 124 ggtctatataacttggcaggcagcaaggtcaataacggttagttatgattgttccttgct 183
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 ggtctatatagcttggcaggcagcaaggtcaataacggttagttatgattgttcctagct 383

                                                                       
Query: 184 tcttaggactaggatttaaaatactccattgttttttattgttgttacccagtactaggg 243
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 tcttaggactaggatttaaaatactccattgttttttattgttgttacgcagtactaggg 443

                                                                       
Query: 244 attaaatgtatagcctcatgcttggaagacaccccacgctatgcctcagttctcttttaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attaaatgtatagcctcatgcttggaagacaccccacgctatgcctcagttctcttttaa 503

                         
Query: 304 cattgtattttgag 317
           ||||||||||||||
Sbjct: 504 cattgtattttgag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)