Query= MSMg01no274_m06.b1 MSMg01no274_m06.b1 CHROMAT_FILE:
MSMg01no274_m06.b1 PHD_FILE: MSMg01no274_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:22 2005
(316 letters)
>mm_chr5_123938878_123939593
Length = 716
Score = 555 bits (287), Expect = e-162
Identities = 307/317 (96%), Gaps = 6/317 (1%)
Strand = Plus / Minus
Query: 4 ggaattcgcgcatatacaacttccgcaggtgctcacacacagccgtgctcaaggtccccg 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggaattcgcgcagacacaacttccgcaggtgctcacacacagccgtgctcaaggtccccg 526
Query: 64 gtaca------ccctcgccctcagtctgtctgtagtcgctagtgctggactcgctggtct 117
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 525 gtacaccctcgccctcgccctcggtctgtctgtagtcgctagtgctggactcgctggtct 466
Query: 118 ccatgctgtgcgaggacagctcgttgctaggcaacggccagacgcgttaccctgggtgcg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ccatgctgtgcgaggacagctcgttgctaggcaacggccagacgcgttaccctgggtgcg 406
Query: 178 tggaagccaacttcctcagtatcagagacccccagctaagctcctacccaggctggctga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tggaagccaacttcctcagtatcagagacccccagctaagctcctacccaggctggctga 346
Query: 238 gataccttgcaaaaacaagtggtggacgcctcttagaataatcttgattgtctgtacaaa 297
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggtaccttgcaaaaacaagtggtggacgcctcttagaataatcttgattgtctgtacaaa 286
Query: 298 gtgctgactgctgttcc 314
|||||||||||||||||
Sbjct: 285 gtgctgactgctgttcc 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_m06.g1 MSMg01no274_m06.g1 CHROMAT_FILE:
MSMg01no274_m06.g1 PHD_FILE: MSMg01no274_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:22 2005
(283 letters)
>mm_chr5_123808882_123809562
Length = 681
Score = 513 bits (265), Expect = e-150
Identities = 278/283 (98%), Gaps = 2/283 (0%)
Strand = Plus / Plus
Query: 1 atttcttttcaggtgagatccaggatgtggcctggttcctggcttcctgaagcatcccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcttttcaggtgagatccaggatgtggcctggttcctggcttcctgaagcatcccct 260
Query: 61 ctctgacttccctcctggtgtcatcgtatgttagtgatgtaacctggagccttctggtcg 120
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 261 ct--gacttccctcctggtgtcatcgtatgttagtgatgtaacctcgagccttctggttg 318
Query: 121 gttttaacctgtagaacagagtgggctgtgcctgcttcatgaagtctttgtggggattag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gttttaacctgtagaacagagtgggctgtgcctgcttcatgaagtctttgtggggattag 378
Query: 181 atgagataacctctgaagagtcttggcatgctcacagctacgttatgaagtcgtcctaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atgagataacctctgaagagtcttggcatgctcacagctacgttatgaagtcgtcctaat 438
Query: 241 gtgcctagtattggatgacaaagcccattttacagatgaagag 283
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgccaagtattggatgacaaagcccattttacagatgaagag 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 681
Length adjustment: 9
Effective length of query: 274
Effective length of database: 672
Effective search space: 184128
Effective search space used: 184128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
