Query= MSMg01no274_o13.b1 MSMg01no274_o13.b1 CHROMAT_FILE:
MSMg01no274_o13.b1 PHD_FILE: MSMg01no274_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:32 2005
(700 letters)
>mm_chr5_6624096_6625197
Length = 1102
Score = 1311 bits (678), Expect = 0.0
Identities = 693/698 (99%), Gaps = 2/698 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaaagctttactatagtgagaaaagttcactaaatacatgatgagatgttgaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattctcaaagctttactatagtgagaaaagttcactaaatacatgatgagacgttgaa 264
Query: 65 attatagaaagcaatcattttattaaatgatttgtaagatatgatgtggatttccatcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attatagaaagcaatcattttattaaatgatttgtaagatatgatgtggatttccatcct 324
Query: 125 cattattgccagactcaagaatatcaccacatatgatggtttatattcctacaataacaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattattgccagactcaagaatatcaccacatatgatggtttatattcctacaataacaa 384
Query: 185 atacatcattaatctgaagaattcaacatagtaaaatgtatttattttgtgctggttcta 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atacatcataaatctgaagaattcaacatagtaaaatgtatttattttgtgctggttcta 444
Query: 245 tgtaacaaagatactgagcagcgacccatcatatgtcaaaacaaaaacaaaaaatccaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtaacaaagatactgagcagcgacccatcatatgtcaaaacaaaaacaaaaaatccaga 504
Query: 305 cccaaatagaaatattttcaattaaaaaaaa-cctgaagagataaaaaaaa-tcaactta 362
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 505 cccaaatagaaatattttcaattaaaaaaaaacctgaagagataaaaaaaaatcaactta 564
Query: 363 aagtatagctaaaattgatattatatatacatctccatgattgctttgttaattcaagcc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagtatagctaaaattgatattatatatacatctccatgattgctttgttaattcaagcc 624
Query: 423 tatggcacacaaaagctgaagaaacgtcaatacaacttaaagcagcttatgaaaatagtt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatggcacacaaaagctgaagaaacgtcaatacaacttaaagcagcttatgaaaatagtt 684
Query: 483 tgatttggagcaatcgtaagtgtagttttaaataagctttcctgtttctgacaaatgact 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgatttggagcaatcgtaagtgtagttttaaataagctttcctgtttctgacaaatgact 744
Query: 543 caaacagaactctttatatgtcattttccttaactgcactcttatgtgttgctgggttta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaacagaactctttatatgtcattttccttaactgcactcttatgtgttgctgggttta 804
Query: 603 agaatacgtcccatcaaggctgagccaatttcagaggactgctgtttaaaggcttttcct 662
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agaatacttcccatcaaggctgagccaatttcagaggactgctgtttaaaggcttttcct 864
Query: 663 tcttgcagacacaaaggggtaactgcctgagaagtttt 700
||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tcttgcagacacaaaggggtaactgcctgagaagtttt 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1102
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1092
Effective search space: 753480
Effective search space used: 753480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_o13.g1 MSMg01no274_o13.g1 CHROMAT_FILE:
MSMg01no274_o13.g1 PHD_FILE: MSMg01no274_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:32 2005
(671 letters)
>mm_chr5_6648731_6649800
Length = 1070
Score = 1259 bits (651), Expect = 0.0
Identities = 668/675 (98%), Gaps = 5/675 (0%)
Strand = Plus / Minus
Query: 1 ttttgcaatatt--aaaaaaacacacacacaaaacaaacaaaca--aaaaaaaatgaaaa 56
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 939 ttttgcaatattaaaaaaaaacacacacacaaaacaaacaaacaacaaaaaaaatgaaaa 880
Query: 57 gacaaaaaaacaaaaatggacttgctgtccttttcttaagagtcaagaggttaaggtcac 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gacaaaaaaacaaaaatggacttgctgtccttttcttaagagtcaagaggttaaggtcac 820
Query: 117 atggatgagatggtcaagagggaacctagagaaaatgactgaactgatgtgtaaataaaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 atggatgagatggtcaagagggaacctagagaaaatgactgaactgatgtgtaaataaaa 760
Query: 177 agctgggctttttgtctgtctgagatgagctagccaagagcaatagcacttctattttta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 agctgggctttttgtctgtctgagatgagctagccaagagcaatagcacttctattttta 700
Query: 237 aaaaaatttctagtgagagatgagctgtctagagatctctgaagagccaacacagatctt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aaaaaatttctagtgagagatgagctgtctagagatctctgaagagccaacacagatctt 640
Query: 297 caagaattttgtttctagcaggatttctgattttggacagaaaatccatgaagagcaaat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 caagaattttgtttctagcaggatttctgattttggacagaaaatccatgaagagcaaat 580
Query: 357 acagctcttttacaattttttttcataactctttcagaattttttctaacaggatttctg 416
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 acagctcttttacaa-tttttttcataactctttcagaattttttctaacaggatttctg 521
Query: 417 agcttggttggaaatcctaataatttcttagagagctggagcagactacagagccaagag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agcttggttggaaatcctaataatttcttagagagctggagcagactacagagccaagag 461
Query: 477 ctatccacagagagctcactaggagccatctcaagaacatagaccatcatcttctgacca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctatccacagagagctcactaggagccatctcaagaacatagaccatcatcttctgacca 401
Query: 537 cagaagagttgacttcaagttgtttttctatccattcccagacatcccttctctcaggac 596
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cagaagatttgacttcaagttgtttttctatccattcccagacatcccttctctcaggac 341
Query: 597 ccccaaccaagccaaggctggttctaggtaggaggtgttgactgaaaagagcatttttgg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ccccaaccaagccaaggctggttctaggtaggaggtgttgactgaaaagagcatttttgg 281
Query: 657 accctaaaacacaat 671
||||||| |||||||
Sbjct: 280 accctaagacacaat 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1070
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1060
Effective search space: 700660
Effective search space used: 700660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
