BAC Information

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BAC

Clone NameMSMg01-275A14
Chromosome5 (Build37)
Map Location 54,487,271 - 54,487,603
singlet/doubletsinglet
Overlap geneStim2
Upstream gene2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275A14.T7 (MSMg01no275_a14.b1)MSMg01-275A14.TJ (MSMg01no275_a14.g1)
ACCAG413596AG413597
length745747
length of high quality
(start - end)
369 (377 - 745)284 (71 - 354)
definitionCHROMAT_FILE: MSMg01no275_a14.b1 PHD_FILE: MSMg01no275_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:42 2005CHROMAT_FILE: MSMg01no275_a14.g1 PHD_FILE: MSMg01no275_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTATGCCTTTATTGCTCTTCACCATTTTTTATGGACATAACCACTGGTA
ATATACTTAATTTTACATACTTTTAAAATCTCAGTTTAGAGCAAAAAAAG
TTACAAAGCCTTATATAGTGTTCCTGGAGCTACTGTTGGGAACAGGATAC
CTCAATAGGATACCTCAATAGTTTTAATTTTTTGTTTTGTTTTTTTGTTT
TGTTTGTTTTTTGTTTGGTTGGTTGCTTGGTTTTTCAAGACAGGGTTTTT
CTGTATAGCCTTAGCTGTCCTGGAACACACTCTGTAGACCAAGCTGGCCT
CGAACTCTTATATCCGCCTGCCTTCGCTTCCCTTAGTGCTGGAATTAAAG
GTGTGTGCCACTACGGCCCGGCTTAGTTTTAAATTTTGAATATCCAGACA
TTTGCTAACATCATGTTGAGTTCTAAAAATTCTGCAAAGTTCTTACATGA
TACAAGGCAAGGAATACACGAGGGTAGGTATTAGCACAACTACTAATACC
TGACCTTCCCAAGTTCAGGGCATGGCTTTAGCTGTCCAAATATAGCATGA
TGCAGGGGTTTAGTCCATGTCAGAGACATGTCTTGCTGACTGACGTGCAA
CTATGAACTCACATTCTGGCCCTGTTCTAAAGATAAACCTTTCTCTGGCA
GCTGGTTGTCATGGTGTCAGTCACAAGTGACGAGTGTACATAGTC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCATCTCACATCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCTGCAA
TACCTCTCTTGGGCATATCCCCCGAAGATGTCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAAAAATTGTGGT
ACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACCCAATTACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGAT
ATTATCCCAGAAACTTATTATACCAAGACATAAGATACAATTTGCAAAAC
ACCTGAAACTGAAGAAGAATGAAGACCAAAGTGTGGACACTTTGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_a14.b1 MSMg01no275_a14.b1 CHROMAT_FILE:
MSMg01no275_a14.b1 PHD_FILE: MSMg01no275_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:42 2005
         (369 letters)



>mm_chr5_54487035_54487803
          Length = 769

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Plus

                                                                       
Query: 37  acggcccggcttagttttaaattttgaatatccagacatttgctaacatcatgttgagtt 96
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 acggcccggcttagttttaaattttgaatatccagacatttgctaacatcatgttgagtt 296

                                                                       
Query: 97  ctaaaaattctgcaaagttcttacatgatacaaggcaaggaatacacgagggtaggtatt 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctaaaaattctgcaaagttcttacatgatacaaggcaaggaatacacgagggtaggtatt 356

                                                                       
Query: 157 agcacaactactaatacctgaccttcccaagttcagggcatggctttagctgtccaaata 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agcacaactactaatacctgaccttcccaagttcagggcatggctttagctgtccaaata 416

                                                                       
Query: 217 tagcatgatgcaggggtttagtccatgtcagagacatgtcttgctgactgacgtgcaact 276
           ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 417 tagcatgatgcaggggtttagaccatgtcagagacatgtcttgctgattgacgtgcaact 476

                                                                       
Query: 277 atgaactcacattctggccctgttctaaagataaacctttctctggcagctggttgtcat 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atgaactcacattctggccctgttctaaagataaacctttctctggcagctggttgtcat 536

                                            
Query: 337 ggtgtcagtcacaagtgacgagtgtacatagtc 369
           |||||||||||||||||||||||||||||||||
Sbjct: 537 ggtgtcagtcacaagtgacgagtgtacatagtc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)