BAC Information

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BAC

Clone NameMSMg01-275A20
Chromosome5 (Build37)
Map Location 136,562,484 - 136,562,695
singlet/doubletsinglet
Overlap geneRasa4
Upstream geneMlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik
Downstream genePolr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275A20.T7 (MSMg01no275_a20.b1)MSMg01-275A20.TJ (MSMg01no275_a20.g1)
ACCAG413608AG413609
length747747
length of high quality
(start - end)
323 (40 - 362)212 (145 - 356)
definitionCHROMAT_FILE: MSMg01no275_a20.b1 PHD_FILE: MSMg01no275_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:43 2005CHROMAT_FILE: MSMg01no275_a20.g1 PHD_FILE: MSMg01no275_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TCTTCCTAGGGCTTTATTTTGTTTATTTGAGACAGGGTCTTATGAAGCCC
AGGTTAGCCTTGAACTTGCTCTATAGGAGAATCCTCCTGAGTCTACCTGC
TACATGCTCTGATTACAGGTGTCTGCTACCACACACAGTTTATGCAGGGC
TAGGAATCAAACTCAGGGCCTCATGCATGCTAGGCAAGCACTTTACCAAC
TGGGCTACATCCCAGGCCAGGTTTTGTGGTCCTCCCTCCCCCCACTCCCC
CAGAAAGGGCTTCACTATGTAGCTGTGGCTTGGAACTCAATAGTGATCCA
CTTGCCTCTGTTTCCAAAGTACTGGCATTTCCCATTTGATTTTAGTGTAT
GCATGGATGCGAGTGTGAGTGCGTGCAAACGTGTGCATGAAGAACTTAGA
GGATAACTTTCTAAAAAGGCCAGTTCTCGCCTACTTTTAGGTAATTTGGA
GAATTGAAGTCAGGTTGTCAGGCTGTTTCAAGCAATTACTTTTACCTGTG
AGCTTCATCACTGGCCCAAGGCACTATTTTTGTTTTGTTTTGTTTTGTTT
TTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAGCTCACACTG
TAGAACAGGCTGGCCTCGAACTAAGAAATTCACCTGCCTCTGCCTCTTGA
ATGCTGGGAGTAAAGGCGTGCACCACCAAGCCTGGACCTGGTTTTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTGG
ATGCCTGAGTGAATGGTGTTTCTAGACGGGACCAATCATAGCAAGGGCTC
AGAGGTAGGAACATAACAGGGTGGACTGAATAGTGAGGACTGGGAAAATG
GCCGAGAAGACGGGAACAGGGTCGCGTGGACAGGTCCCCAGTGTACAGAG
CAGGCCCAGCAGCAGTCCTGTTCCCTTCCCATATACTCTCTGCCCTGGTG
AGACTTGTTTTAGTGCGCCCCGCCTTCCACCATTCATTCCTTCCTCAAGC
CAGTGGCCACTGGCCCGGTCTGGCGACTTGTAGGCCTCTCTATATTTAGG
GCCTTGGCTGTTTCTAGACTGGAAGAGGAAGGAGAGGGCAAACCCCGAAA
TAGCCCTAGGCTTGTCCCCAGGGCCACAGACAGGTTGAAGGAGCCAGTGG
GGCACTAGTCACCGTGGGACTCAGCTTTTACCCAGCTGACCTAGGTACCC
AGTAGTGGAAGGTAGTCATGAGCAGGCAGAGAGAGGTAGTATTAGAACAC
TGCTCGCAATGGCAGCTACAGAAGACTAAATACAAAGGGCTCCACAAGTG
TGGTGGGTGGCACGCTCACATGTCATATACCTTAGGAAGGAGAGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_a20.g1 MSMg01no275_a20.g1 CHROMAT_FILE:
MSMg01no275_a20.g1 PHD_FILE: MSMg01no275_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:43 2005
         (212 letters)



>mm_chr5_136562284_136562895
          Length = 612

 Score =  395 bits (204), Expect = e-114
 Identities = 210/212 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttggatgcctgagtgaatggtgtttctagacgggaccaatcatagcaagggctcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ccttggatgcctgagtgaatggtgtttctagacgggaccaatcatagcaagggctcagag 353

                                                                       
Query: 61  gtaggaacataacagggtggactgaatagtgaggactgggaaaatggccgagaagacggg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 352 gtaggaacataacagggtggactgaatagtgaggactgggagaatggccgagaagacggg 293

                                                                       
Query: 121 aacagggtcgcgtggacaggtccccagtgtacagagcaggcccagcagcagtcctgttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aacagggtcgcgtggacaggtccccagtgtacagagcaggcccagcagcagtcctgttcc 233

                                           
Query: 181 cttcccatatactctctgccctggtgagactt 212
           |||||||||||||||| |||||||||||||||
Sbjct: 232 cttcccatatactctccgccctggtgagactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)