BAC Information

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BAC

Clone NameMSMg01-275C15
Chromosome5 (Build37)
Map Location 24,625,809 - 24,807,374
singlet/doubletdoublet
Overlap geneGalntl5, E130116L18Rik, Galnt11, Mll3
Upstream geneKlhl7, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2
Downstream geneGm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275C15.T7 (MSMg01no275_c15.b1)MSMg01-275C15.TJ (MSMg01no275_c15.g1)
ACCAG413692AG413693
length750746
length of high quality
(start - end)
302 (123 - 424)572 (79 - 650)
definitionCHROMAT_FILE: MSMg01no275_c15.b1 PHD_FILE: MSMg01no275_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:51 2005CHROMAT_FILE: MSMg01no275_c15.g1 PHD_FILE: MSMg01no275_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,625,809 - 24,626,110)(24,806,803 - 24,807,374)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGTTCTTCCCGAGATACATGAAATTCTATCTCAAATAAAACAAACAAAA
TAAACTTAAGGAATCTACATCGCCTTGCAACCTCTGGGGAGAGGTGATTA
AAGTCAAGAGCAACTGAGCTTAGTGTGGAGACAGTGGGAGATGCTGCAGA
CAGAGTAGCTACCTGTGATGAGGGATGGAGGGACCTGCAACCTGTAGACA
GTGCATAGATAGCATCATAGGGTTGGAGAGAAGCTTAGCAGTTAAGAGCA
CTTGCTGTTCTCCCAGAGGACCTGAATTCTGTTCTAGCATCCATATCGGG
TGACATGTAGTTTGTGCTAGCTGGCTCAAGTCAACTTGACACAAACCTAG
ACTTACCTGGGAAGGGAATTTTGTTGTTGATGTTGTTTCTTTTGTTTTTT
GAAACAGGGTTTCTCTGTATAGCCTTGGCTGTCCTGGAACTCACTTTGTA
GACCAGGCTGGCCTTGAACTCTCAAATCTGCCTGCCTCTGCCTCCCATGT
GCGGTTATTAAAGGCTTGCACCATCACTTTCCGGCTGGATGAGGGACTCT
TACGCGTTCCCGGATTGTGCCTTCTCATTGTCATACGGTTTTTTCTTGAT
TGTGTTTTGTGTTATGGGCTGCCCTTCCATCCTTTGTCCCTGTTTCTGGT
CTTTTTTTCCTCGCCCTCTCCTTCATTTTCCATTGTTTTTTTTCTTCTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGGGACAAGGAAAAAAGGT
ACCACGTCCCACCAAAGACACTTAAATAAAGTTTGATGCACCTGTTTTTG
ATTAGAAAAAATGCATAGCAATAATAAAACTGCTGGTACATGAATACAGC
TTGTATTTTGAGAGTATTACATTGAGCAAAGAGGGGTCATTTCCAATAAC
TTAATTAACATTGAAATGACAGTTACAGAGATTAGCAGTAACTATGAGGA
AGACAGGAAGAGGGTTTTTGATTCTAAAGAGTAGACATGGGGAACTTTTT
TATACTGGAATATTTTCTTGATCATATGACTAATTTATGTGTGTGCTAAT
AATTCATAGAATTGTACACCAGAACTTAAACTTTCCCTTTGTTTTAAGTT
GTAAGTTATAAAGAACTCCGAATAGTAATGCTACAAGTAGACAAGAGGTT
CAGAGCTTAGGCATTTTCAGAAATTATAATTTGAATGTGTCCCCAATCAA
ATTTAGGGTTTTGTAAGTTTTGTCAATCTTTTTAGTCTAAGAGAGGGAAT
GTCATGTGTGCTAAAAATTCTTTTAAAATGTGTCATTTTGTGTATATAAG
AAATGTCATCTTACTAAATGGTTATAGTCTTAGTTACAGATATCAGTTAT
TCCAACTTTGTGAATTCGTGTCACTTCCTTGGCATCACACATAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_c15.b1 MSMg01no275_c15.b1 CHROMAT_FILE:
MSMg01no275_c15.b1 PHD_FILE: MSMg01no275_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:51 2005
         (302 letters)



>mm_chr5_24625609_24626310
          Length = 702

 Score =  538 bits (278), Expect = e-157
 Identities = 296/302 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgcaacctctggggagaggtgattaaagtcaagagcaactgagcttagtgtggagac 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ccttgcaacctctggggagaggtgattaaagtcaagagaaactgagcttagtgtggagac 260

                                                                       
Query: 61  agtgggagatgctgcagacagagtagctacctgtgatgagggatggagggacctgcaacc 120
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 261 agtgggagatgctgcagacagagtggctgcctgtgatgagggatggagggacctgcaacc 320

                                                                       
Query: 121 tgtagacagtgcatagatagcatcatagggttggagagaagcttagcagttaagagcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagacagtgcatagatagcatcatagggttggagagaagcttagcagttaagagcact 380

                                                                       
Query: 181 tgctgttctcccagaggacctgaattctgttctagcatccatatcgggtgacatgtagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tgctgttctcccagaggacctgaattctgttctagcatccatatcgggtgacatggagtt 440

                                                                       
Query: 241 tgtgctagctggctcaagtcaacttgacacaaacctagacttacctgggaagggaatttt 300
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgctagttggttcaagtcaacttgacacaaacctagacttacctgggaagggaatttt 500

             
Query: 301 gt 302
           ||
Sbjct: 501 gt 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no275_c15.g1 MSMg01no275_c15.g1 CHROMAT_FILE:
MSMg01no275_c15.g1 PHD_FILE: MSMg01no275_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:51 2005
         (572 letters)



>mm_chr5_24806603_24807574
          Length = 972

 Score = 1060 bits (548), Expect = 0.0
 Identities = 566/572 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagggacaaggaaaaaaggtaccacgtcccaccaaagacacttaaataaagtttgatg 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 772 aggagggacaaggaaaaaaggtaccacgtcccaccaaagacaattaaataaagtttgatg 713

                                                                       
Query: 61  cacctgtttttgattagaaaaaatgcatagcaataataaaactgctggtacatgaataca 120
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 712 cacctgtttttgatcagaaaaaatacatagcaataataaaactgctggtacatgaataca 653

                                                                       
Query: 121 gcttgtattttgagagtattacattgagcaaagaggggtcatttccaataacttaattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gcttgtattttgagagtattacattgagcaaagaggggtcatttccaataacttaattaa 593

                                                                       
Query: 181 cattgaaatgacagttacagagattagcagtaactatgaggaagacaggaagagggtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cattgaaatgacagttacagagattagcagtaactatgaggaagacaggaagagggtttt 533

                                                                       
Query: 241 tgattctaaagagtagacatggggaacttttttatactggaatattttcttgatcatatg 300
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 532 tgattctaaagagtagacatggggaacttttttatactggaacattttcttgattatatg 473

                                                                       
Query: 301 actaatttatgtgtgtgctaataattcatagaattgtacaccagaacttaaactttccct 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 actaatttatctgtgtgctaataattcatagaattgtacaccagaacttaaactttccct 413

                                                                       
Query: 361 ttgttttaagttgtaagttataaagaactccgaatagtaatgctacaagtagacaagagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttgttttaagttgtaagttataaagaactccgaatagtaatgctacaagtagacaagagg 353

                                                                       
Query: 421 ttcagagcttaggcattttcagaaattataatttgaatgtgtccccaatcaaatttaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttcagagcttaggcattttcagaaattataatttgaatgtgtccccaatcaaatttaggg 293

                                                                       
Query: 481 ttttgtaagttttgtcaatctttttagtctaagagagggaatgtcatgtgtgctaaaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttttgtaagttttgtcaatctttttagtctaagagagggaatgtcatgtgtgctaaaaat 233

                                           
Query: 541 tcttttaaaatgtgtcattttgtgtatataag 572
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tcttttaaaatgtgtcattttgtgtatataag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)