BAC Information

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BAC

Clone NameMSMg01-275H04
Chromosome5 (Build37)
Map Location 12,392,169 - 12,392,477
singlet/doubletsinglet
Overlap geneSema3d
Upstream geneLOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275H04.T7 (MSMg01no275_h04.b1)MSMg01-275H04.TJ (MSMg01no275_h04.g1)
ACCAG413898AG413899
length766772
length of high quality
(start - end)
313 (40 - 352)238 (121 - 358)
definitionCHROMAT_FILE: MSMg01no275_h04.b1 PHD_FILE: MSMg01no275_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:11 2005CHROMAT_FILE: MSMg01no275_h04.g1 PHD_FILE: MSMg01no275_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGCCAGTTAGGCTCATGATACTGTGTATCCAAAAAACAACCAGAGGAAA
GTGGTCTGACCTATGATCCTTTACTTCAGTCACAAAGAGGAATGAAACAA
TACAGTATTCTGATGAAAGTTTCTTGCTTATTTAATTTCAATAATGGAGA
CATGTTTAATTTGTATTTTGCATCATGTCGTTTCTCTTATCTCCTATCAG
CATATGCTTAAGTAATTGATGGCATTTGAACTAAATTGTAACCCAGTTAT
TATGATAAAATATTCTTATTAATGAAAACAATAATTTCAATTATTATCTC
TTTTGTATAATTGATCTTCTATCTTTCCCTCTTGTTAGATTTCCATCTAT
AACCTACTCAGAGCTTATTTAAAAGAAAAAAATGCACGCTGATAGTAGTA
GTAGACAGGTTTCTGCATGCAAAACTATCTGCATGCATGATAAAAGCATA
TAACACACTTAATTTACATTTTAAACTTAATTCAAATCAAAAAGCTTGTG
TTCCGTTTGAAGTTAGGGCTGTTATCACCTGTAAAGTAGCTGTTCAAAAG
CATCAATGCCAGACATACAGATGAGCAAATAACTTCTCCCTTTCTTGACT
CACTTCATATCTTGCAGAGCTGTGCGGACTGATGTCTTAGACTTCTCTGA
GAAGAGGTTTGGCAGACAACATTTATTGTTCAGGTTTTAACAAGGCAAGA
TTTTGGCAGGCATATT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATACTTGGAATAACTCCTTAGAAAATAATT
TTACTAATGTGTTCATACATAAATAGTGAGATAAAAATATTCACCTAGAG
CCGGGTGTGGTGGTGCATGCCTTTAATCCCAGTCCTTGGGAGGCAGAGGC
AGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGCTCCAG
GACAGCCAGGGCTATAAAGAGAAACCCTGTCTTGAAAAACAATATATATA
TATTCGTCTAGCAGGTGTTCGTGATAATAATTCATAACATTTCTAATTGC
TTTACCATCACTAATATCCCCCCGCCCACCCGTGTCTTATCCTCTGGATG
ACTTTTACTTGCGTGTGTCCGATCCAAAAATAACTGAGCTTTCTTGGCGA
TTTCCAGGTGTGTATCAAACAAAAGGCCACAAAAGTCAAGGCAACAGTTT
GTCTTTGAAGCTTATCTTAGTGACAGAAATTGACAAATTATAGTCATTAG
AGTAAATATAAAATCGAACCAAGTCGCTAGATGTACAGTATAGTGTGTCT
GACCTTCTACAAACATATATTTATAAATGACTTATATAGAATTAAATGTG
AATATGTTCACATTTTAGAAATCCCCAAAAGAAATGTAGAAAAAAGGAGT
TAATAAGAACTATTTTTGGGAAGTATACCAACATATTATCATGTAGTTTC
AGGCTAATTCAAAAACCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_h04.b1 MSMg01no275_h04.b1 CHROMAT_FILE:
MSMg01no275_h04.b1 PHD_FILE: MSMg01no275_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:11 2005
         (313 letters)



>mm_chr5_12391965_12392677
          Length = 713

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggccagttaggctcatgatactgtgtatccaaaaaacaaccagaggaaagtg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcaaggccagttaggctcatgatactgtgtatccaaaaaacaaccaaaggaaagtg 264

                                                                       
Query: 65  gtctgacctatgatcctttacttcagtcacaaagaggaatgaaacaatacagtattctga 124
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtctgacctatgataatttacttcagtcacaaagaggaatgaaacaatacagtattctga 324

                                                                       
Query: 125 tgaaagtttcttgcttatttaatttcaataatggagacatgtttaatttgtattttgcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaaagtttcttgcttatttaatttcaataatggagacatgtttaatttgtattttgcat 384

                                                                       
Query: 185 catgtcgtttctcttatctcctatcagcatatgcttaagtaattgatggcatttgaacta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 385 catgtcgtttctcttatctcctatcagcatatgcttaagtaattgatggcatccgaacta 444

                                                                       
Query: 245 aattgtaacccagttattatgataaaatattcttattaatgaaaacaataatttcaatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattgtaacccagttattatgataaaatattcttattaatgaaaacaataatttcaatta 504

                    
Query: 305 ttatctctt 313
           |||||||||
Sbjct: 505 ttatctctt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)