BAC Information

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BAC

Clone NameMSMg01-275I03
Chromosome5 (Build37)
Map Location 123,427,145 - 123,427,743
singlet/doubletsinglet
Overlap geneFbxl10
Upstream geneCutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34
Downstream geneLOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275I03.T7 (MSMg01no275_i03.b1)MSMg01-275I03.TJ (MSMg01no275_i03.g1)
ACCAG413939AG413940
length737739
length of high quality
(start - end)
599 (71 - 669)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no275_i03.b1 PHD_FILE: MSMg01no275_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:15 2005CHROMAT_FILE: MSMg01no275_i03.g1 PHD_FILE: MSMg01no275_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGTTCTACCCCTTGCATACCTGTGGTAGCCTGGCTGAAAGGAGG
ATGAAAAACACTGGCTGTTGGCCAGGGGACCACTAAAACCAGAACAACAG
CACTGAAACCAACACACTGCTGCAGTCCCACAGGCTTCAAACGCTAGGAC
TGTAAGCATGTGCCACCACACCTGGCCTTTAACCTAGTAGCTACCAGACT
GCTCCTTGAATCAGTATCATAAACCCATCATCACCTGTGAGAAAGTCACT
GACTAGAAACCTATACAGCAGTGAAATAAATCTATGCTCATACACAATAA
ATACTGTGGACTGCCTAAGTACAAAGATGAATGAATAAAAGAAGACTGGG
GCTGGAGAGATGGCTCAGTGGTTAAGAGTGCAGACTGCTCTTTTAGAGGT
CCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCACCTATAAT
GCGGTCTGACACCCTCTTCTGGTGAGTCTGAAGTCAATGACAGTGTACTC
ATTACAAAAAATAAATAAATAAATCTTAAAAGAAGATAAAATCAAGAGGC
TATCCAGTATGATTCCACAAACATAATGTACCAGGCAAGAGAGAATCTGG
GGTGCTGGTCTCCATGATACGTTTGGGTTACACATACATACTCACACTCA
GTCAACACTATTTAGTTTTTTAGACAGGATATAGAAA
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGGCTAGCAAGGCCAGCCTGGACT
ATCGAATGAGCTCCAGGTAGCCCCCGCTAGTCAGGGAAACCCTGTCTTGA
AAAACTAAAACAAGCTGGGTGTGGTGGCACACGCCTTTAGTCCCAGTACT
CGGGAGGCAGAGGCAGGCTGATTTCTGAGCTCGAGGCCAGCCTGGTCTAC
AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGGA
AAAAAAAAAGAAAAAGAAAAACTAAAACAAAACAAAACAACAATAACAAC
AACAAAACACATTTTTTTTTTTACCTGCCCGCCTCGCTATTACTTCAGTG
TTCACCCCAAGGTGGTGGCTCAAGGCTCTGACATATTGGGTTGAAAGGAC
GGAGGTGAACTGGACAAAAGGAGCCACCTTCAAAGCTCTGGCGCTTTAAG
TTGTCGACATAGCTTCAGATAGCTCTGACTGTTACACATCCCAGGGGGGC
CAACACAATTCAAGTAATGGATGATAAAGAACTGTGTGTCGGGTAGTTCT
CTGGTTTTATGACCCCGTAATATGAGTCCTGACAGGCCGTACTTACCTAC
CCTGCAGAGAACAAGTTTCTAGTCACAGAGCTCCCTACAGTGCAGTGCAT
GGAGAGACAGCAAAACTGGTGGACGCCCTCCTCTGCGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_i03.b1 MSMg01no275_i03.b1 CHROMAT_FILE:
MSMg01no275_i03.b1 PHD_FILE: MSMg01no275_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:15 2005
         (599 letters)



>mm_chr5_123426945_123427943
          Length = 999

 Score = 1089 bits (563), Expect = 0.0
 Identities = 590/599 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacctgtggtagcctggctgaaaggaggatgaaaaacactggctgttggccaggggac 60
           |||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 201 catacctgtgttagcctggctgaaaggaggatgaaaaacactggctgttggggaggggac 260

                                                                       
Query: 61  cactaaaaccagaacaacagcactgaaaccaacacactgctgcagtcccacaggcttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactaaaaccagaacaacagcactgaaaccaacacactgctgcagtcccacaggcttcaa 320

                                                                       
Query: 121 acgctaggactgtaagcatgtgccaccacacctggcctttaacctagtagctaccagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 acgctaggactgtaagcatgtgccaccacacctggcctttaacctagcagctaccagact 380

                                                                       
Query: 181 gctccttgaatcagtatcataaacccatcatcacctgtgagaaagtcactgactagaaac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gctccttgaatcagtatcataaacccatcatcacctgtgagaaagtcactgaatagaaac 440

                                                                       
Query: 241 ctatacagcagtgaaataaatctatgctcatacacaataaatactgtggactgcctaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ctatacagcagtgaaataaatctatgctcatacacaataaatactatggactgcctaagt 500

                                                                       
Query: 301 acaaagatgaatgaataaaagaagactggggctggagagatggctcagtggttaagagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaagatgaatgaataaaagaagactggggctggagagatggctcagtggttaagagtg 560

                                                                       
Query: 361 cagactgctcttttagaggtcctgagttcaattcccagcaaccacatggtggctcacaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagactgctcttttagaggtcctgagttcaattcccagcaaccacatggtggctcacaac 620

                                                                       
Query: 421 cacctataatgcggtctgacaccctcttctggtgagtctgaagtcaatgacagtgtactc 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacctataatgtggtctgacaccctcttctggtgagtctgaagtcaatgacagtgtactc 680

                                                                       
Query: 481 attacaaaaaataaataaataaatcttaaaagaagataaaatcaagaggctatccagtat 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attacaataaataaataaataaatcttaaaagaagataaaatcaagaggctatccagtat 740

                                                                      
Query: 541 gattccacaaacataatgtaccaggcaagagagaatctggggtgctggtctccatgata 599
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 gattccacaaacataatgtaccaggcaagagagaatctggggttctggtctccatgata 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)