Query= MSMg01no275_k23.b1 MSMg01no275_k23.b1 CHROMAT_FILE:
MSMg01no275_k23.b1 PHD_FILE: MSMg01no275_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:28 2005
(704 letters)
>mm_chr5_47893739_47894841
Length = 1103
Score = 1286 bits (665), Expect = 0.0
Identities = 692/701 (98%), Gaps = 1/701 (0%)
Strand = Plus / Plus
Query: 4 ggaattccctaaaatgttactattaccattgtacccattacactaaaagtttctacttca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctaaaatgttactattaccattgtacccattacactaaaagtttctacttca 263
Query: 64 tttctttggatttgcctgttccattcttctagaagatgttcctgtgcagtgagcatgccg 123
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 264 tttctttggatttgcct-ttccattcttctagaagatgttcctgtgcagtaagcatgtcg 322
Query: 124 tgcttaccaatcttcctagcacagacacagaagactctatgtgagattaatgagtaaacc 183
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgcttaccaatcttcccagcacagacacagaagactctatgtgagattaatgagtaaacc 382
Query: 184 tgtgggtgagtcagaatctgagcacctattcacatttccttgttatgtgatagtgactaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgggtgagtcagaatctgagcacctattcacatttccttgttatgtgatagtgactaa 442
Query: 244 tgtgcacctaaccatgctgaccttcacaagtactagagaaatatcttcttttcctcgcaa 303
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtgcacctaaccatgatgaccttcacaagtactagagaaatatcttcttttcctcgcaa 502
Query: 304 gcagtcaagcatgaccttcatttgttaggctgcctgccaagtggaaagtacaacaaaata 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 503 gcagtcaagcatgaccttcatttgttaggctgcctgccaagtgaaaagtacaacaaaata 562
Query: 364 gtccttccaaattatgtaggcattgtaaaactaaaggctccacagagattctaaaggcgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtccttccaaattatgtaggcattgtaaaactaaaggctccacagagattctaaaggcgt 622
Query: 424 agggaacctggagctgaagcagtgaacaatatggtaaacactccactgagcctcttcaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agggaacctggagctgaagcagtgaacaatatggtaaacactccactgagcctcttcaac 682
Query: 484 atactgtatatcatcattgcaaagctccaattcagagatgaccagcagaatgtgtcatga 543
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 683 atactgtatatcatcattgcaaagctccaactcagagatgaccagcagaatgtgtcatga 742
Query: 544 gaatgtgtcatgctctgacatccatccttcctggggaacagaatctttgggaaaatagct 603
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaatgagtcatgctctgacatccatccttcctggggaacagaatctttgggaaaatagct 802
Query: 604 atgactcttgtgtgttctttgcaaaattcagaaactccgagttagcttgaagtaatagta 663
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atgactcttgtgtattctttgcaaaattcagaaactccgagttagcttgaagtaatagta 862
Query: 664 gtttaaaaaagggcccagagaattggaacaatgtaagggaa 704
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gtttaaaaaagggcccagagaattggaacaatgtaagggaa 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1103
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1093
Effective search space: 758542
Effective search space used: 758542
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no275_k23.g1 MSMg01no275_k23.g1 CHROMAT_FILE:
MSMg01no275_k23.g1 PHD_FILE: MSMg01no275_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:28 2005
(677 letters)
>mm_chr5_47936113_47937191
Length = 1079
Score = 1274 bits (659), Expect = 0.0
Identities = 674/679 (99%), Gaps = 2/679 (0%)
Strand = Plus / Minus
Query: 1 ttcaccgtattaaagaaaacatgtcaaatgtgttcaaaaccatgggccgtacaggaacga 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 879 ttcaccgtattaaagaaaacatgtcaaatgtgttcaaaaccatgggccgtagaggaacga 820
Query: 61 aaatgttatagtaaaatcatgccagaaagagctcatccaatcagtttcggcaggagggcc 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 819 aaatgttatagtaaaatcatgccagaaagagctcatccaatcagtttaggcaggagggcc 760
Query: 121 atgccaggactggaagattaatgtggaaaacctgatccatagcctaagcaatggagtgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 atgccaggactggaagattaatgtggaaaacctgatccatagcctaagcaatggagtgga 700
Query: 181 acctgagagtaatgtgtggttacagtgtcccaagttaaagagtttgcacttactattgtc 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 acctgagagtaatgtgtgattacagtgtcccaagttaaagagtttgcacttactattgtc 640
Query: 241 aatagaggatcaagttagcaatgaagagatgagaatattcctctcac-aaaagaaataaa 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 639 aatagaggatcaagttagcaatgaagagatgagaatattcctctcacaaaaagaaataaa 580
Query: 300 aaggcagggttttatcatccaagtgggctaggctcagaaataaatgggatgataactaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aaggcagggttttatcatccaagtgggctaggctcagaaataaatgggatgataactaat 520
Query: 360 ttacagacagcttgatttgtaatggaaaagggcacatttagagtataaaaacctacatct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttacagacagcttgatttgtaatggaaaagggcacatttagagtataaaaacctacatct 460
Query: 420 aaatcccaaggcagttaagtaaaagttatggaacttgattattccattttatgtctttaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaatcccaaggcagttaagtaaaagttatggaacttgattattccattttatgtctttaa 400
Query: 480 aaactccaattttcttacttctacaattggcatg-ttttttcttaacttgacacatagat 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 399 aaactccaattttcttacttctacaattggcatgtttttttcttaacttgacacatagat 340
Query: 539 ctcaagatttatagactacatatgtccagagcattggcaattgtataagttctcaaatat 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctcaagatttatagactacatatgtccagagcattggcaattgtataagttctcaaatat 280
Query: 599 accagctcctcagagttgtttcttcattactttccaaaagataggcactgtcagaggcat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 accagctcctcagagttgtttcttcattactttccaaaagataggcactgtcagaggcat 220
Query: 659 atggagataggaatactag 677
|||||||||||||||||||
Sbjct: 219 atggagataggaatactag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1079
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1069
Effective search space: 713023
Effective search space used: 713023
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
