BAC Information

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BAC

Clone NameMSMg01-276A07
Chromosome5 (Build37)
Map Location 5,248,428 - 5,248,737
singlet/doubletsinglet
Overlap genePftk1
Upstream geneFzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276A07.T7 (MSMg01no276_a07.b1)MSMg01-276A07.TJ (MSMg01no276_a07.g1)
ACCAG414315AG414316
length729725
length of high quality
(start - end)
314 (46 - 359)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no276_a07.b1 PHD_FILE: MSMg01no276_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:52 2005CHROMAT_FILE: MSMg01no276_a07.g1 PHD_FILE: MSMg01no276_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATTACAGACCACTAAGGCACCTTGGTCAAAAGGCAAGAATTGGC
TTGGTTTAGAGCTTAGGATTTCCCAAAAATGAAGGACTTTCCCTTTGAGG
ATCAGTGCCTTGCTGTTAAATTCCAAACCTATTTACATTGGGAACAAACC
ATGAGACTCTCATTCATTCTTGAAGTGAGACAACATTCATTCTTGAAATG
AAATGCTTTGTGAGTCTGATTTTAAAACTTCTCACAAGCACAGAAAAGTT
TTGAAACATCTCTAAGAGACTGTATTCAAGAGATTTTAATGATAAATTGG
TCTAACTCCTTAAATANATCTTTTAACGAAGCCAAAAGTATTTTGCAAAA
ATAAGTTAAATTCATTCATTCATTTGCTAGAAGGATACTCATAACTCAAG
AGTCTGTCTACTTATAGCTTTCTCTCTTCCAAAATGCTCAACCTCCCAGG
GAGAGAGTGCATAACCCTCACTGAGCACACGGCCTGCAGTCTTCTGCTAG
TGGGCAGCCCTGGTGAAGGCCAGTCCTTCTGTTGACTGTGACAAACTTAC
CGAGCTGGGGCTGGAGTGCCGCCGAACTTTAGGTGACTCTTTGCCAGCAT
AGGAGGATTTAAAGTTAATGCATGCATTGTTCTCAGAATGGACCCTTTTG
ACTTGGTTGGCTGGTTTCTCAAATGGGTN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTAAATGGGGTTATTTGATTTTCTGAAGTCAACCTTCTTGAGTTCTTTAT
ATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACAGTGTCTTTTGCCTT
GCAGAAACTTTGGAGTTTCATTAGGTTCCATTTGTCAATTCTCGATCTTA
CAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATA
TCTGCTGTTTCNGTACTTTTGATNTCAGANCTCCTGACTGGTGTGAGGTG
GAATCTCAGGGTTGTTTTGATTAGAAAAAACATGATGATTACGGATGTTG
AACACTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAAT
TCTTTGTTCAGTTCTGAGCCCCATTTTTAAATGGGGTTATTTGATTTTCT
GAAGTCAACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCTATCTGTTGGTGGTCTCTTT
GTCTTATTGACGGTGTCTTTTGCCCTCGCTTAACCTTTGGAGTTTCATTA
GGTTTCATCTGTCAATTCTCGAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_a07.b1 MSMg01no276_a07.b1 CHROMAT_FILE:
MSMg01no276_a07.b1 PHD_FILE: MSMg01no276_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:52 2005
         (314 letters)



>mm_chr5_5248224_5248937
          Length = 714

 Score =  530 bits (274), Expect = e-155
 Identities = 301/310 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattacagaccactaaggcaccttggtcaaaaggcaagaattggcttggtttag 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattacagaaaactaaggcaccttggtcaaaaggcaagaattggcttggtttag 264

                                                                       
Query: 65  agcttaggatttcccaaaaatgaaggactttccctttgaggatcagtgccttgctgttaa 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcttaggatttcctaaaaatgaaggactttccctttgaggatcagtgccttgctgttaa 324

                                                                       
Query: 125 attccaaacctatttacattgggaacaaaccatgagactctcattcattcttgaagtgag 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attccaaacctatttgcattgggaacaaaccatgagactctcattcattcttgaagtgag 384

                                                                       
Query: 185 acaacattcattcttgaaatgaaatgctttgtgagtctgattttaaaacttctcacaagc 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 acaacattcattcttgaaatgaaatgctttgtgagtctgatttaaaaacttctcacaagc 444

                                                                       
Query: 245 acagaaaagttttgaaacatctctaagagactgtattcaagagattttaatgataaattg 304
           | || ||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 445 ataggaaagttttgaaacatctctaagagactgtagccaagagattttaatgataaattg 504

                     
Query: 305 gtctaactcc 314
           ||||||||||
Sbjct: 505 gtctaactcc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)