BAC Information

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BAC

Clone NameMSMg01-276D11
Chromosome5 (Build37)
Map Location 22,878,606 - 23,068,080
singlet/doubletdoublet
Overlap gene4930580E04Rik, BC050254, Srpk2
Upstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276D11.T7 (MSMg01no276_d11.b1)MSMg01-276D11.TJ (MSMg01no276_d11.g1)
ACCAG414461AG414462
length820764
length of high quality
(start - end)
235 (168 - 402)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no276_d11.b1 PHD_FILE: MSMg01no276_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:07 2005CHROMAT_FILE: MSMg01no276_d11.g1 PHD_FILE: MSMg01no276_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(23,067,846 - 23,068,080)(22,878,606 - 22,878,896)
sequence
TTTTTTTTNNTTTTTTTTTCTTCCANACCNCCGTCTTCNNNCTCTCTATA
ATTGCGGCCGCTAAACGACTCCTATTTCCAGAAATCCGCGGAATTCTCTT
TCCTTACACAAAAGTGTCTTGTGTTCCACCTGTTCATCTTGTTTATATTG
CCTCTATTTCTACACCACTGTTGTCTTACAAGCCAATTTTTAATTCTCCT
GGAATAAAAGAAGACATCATCAGTAACAAAAGGTACCCTTTTTCTTTGCA
GAAGAAATGTTCACCAAAGATGGAACAGGCTTTTGACAGCGGTCAGCTTA
GTCTAGAGCTTGTGACTCCATGGTGTCCTCATGTCTTTGGGGCCGTGCTG
GTCTCAGTTGTCCATGACGAGGCTTTTTATTGCCTCGGGTTTACAGGTCT
AGTTTTTTTCATGAACTGCCCATTTTAGCATGAAGACCGGTAATTAAATC
CTGCTGTTGCTAGAGCATTTCCACCACGTCATGTTTGCCTTGGCATTCTC
TTTAAAGTGTGACTTTCTGTGTCCTGCATCTCTAGTCAGCGTGCCCAACT
ATGTCTGTTCAGTAACATTGGGGACTGAGATCTGAGACTTGGCTTTAGAC
CATGACTCTTGCTTTTCGTGTCTGTGTCCTTTGATAAATGCCTTTTCTTC
TAGCCTTTGATTTATCATCTATAAATATAATATTAATCCCCCCAATGAAT
ATATTAATATTTTTGTATCTTAAAATTTTCGCATGGAAATAAAATTACAG
GATTGTAGGAACTAGTATTTTTTCTTGGTTTCCCCTGGATTGAATAAAAT
CGTGTTACCCATTCGAATTT
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTCCCCATAAAGACAGTTTTA
TTTGGAACCGGAGGACAGCTAAAGACCAGAGCCTCTGTGAAAGCAGTACA
CTCTGCGATGCTCTCAGCTGCACTGCAGTGAACATGACCAGCACCTTGTG
TGAGTTCCCACTTTGAGGCTGCTGATCCCTTGGAGTCTGCAAGGGACTTC
ATCAGGTCAACGGGCCAATGAATGTCTACTTTAATAGTTATAGATGAGAA
AGCTCCTAGAATGAAAGAATATGGAAGAGGCTCTTTGTGCCCAAATACTG
GATAATCATAGAAATGTTGTAATTCGCCCCCGCCCCCCTAGATTCTATAG
GAGAAAAAAGTAAGGTTCTGGGTTTTTTAAAAAAATACAAACTAGGGCTG
GTGAGATAGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAG
GAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAG
ATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTACTTACT
TATTATATATAAATAAATCTTTAAAAAAAAATCAATCTAGTAACAACAGA
GTATGGGATCTTTGTAACATATACTGTTTTCTAACTAATTACCTATTTTG
ATACCTTATACAGAACATATTGTTAACTACATCCCCCTATAAATTTCTAT
AAATCCCTTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_d11.b1 MSMg01no276_d11.b1 CHROMAT_FILE:
MSMg01no276_d11.b1 PHD_FILE: MSMg01no276_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:07 2005
         (235 letters)



>mm_chr5_23067646_23068280
          Length = 635

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttgtcttacaagccaatttttaattctcctggaataaaagaagacatcatcagtaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctgttgtcttacaagccaatttttaattctcctggaataaaagaagacatcatcagtaac 376

                                                                       
Query: 61  aaaaggtaccctttttctttgcagaagaaatgttcaccaaagatggaacaggcttttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaaaggtaccctttttctttgcagaagaaatgttcaccaaagatggaacaggcttttgac 316

                                                                       
Query: 121 agcggtcagcttagtctagagcttgtgactccatggtgtcctcatgtctttggggccgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcggtcagcttagtctagagcttgtgactccatggtgtcctcatgtctttggggccgtg 256

                                                                  
Query: 181 ctggtctcagttgtccatgacgaggctttttattgcctcgggtttacaggtctag 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctggtctcagttgtccatgacgaggctttttattgcctcgggtttacaggtctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no276_d11.g1 MSMg01no276_d11.g1 CHROMAT_FILE:
MSMg01no276_d11.g1 PHD_FILE: MSMg01no276_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:07 2005
         (292 letters)



>mm_chr5_22878406_22879097
          Length = 692

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcctccccataaagacagttttatttggaaccggaggacagctaaagaccagagcctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agtcctccccataaagacagttttatttggaaccggaggacagctaaagagcagagcctc 260

                                                                       
Query: 61  tgtgaaagcagtacactctgcgatgctctcagctgcactgcagtgaacatgaccagcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaaagcagtacactctgcgatgctctcagctgcactgcagtgaacatgaccagcacc 320

                                                                       
Query: 121 ttgtgtgagttcccactttgaggctgctgatcccttggagtctgcaagggacttcatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgtgagttcccactttgaggctgctgatcccttggagtctgcaagggacttcatcag 380

                                                                       
Query: 181 gtcaacgggccaatgaatgtctactttaatagttatagatgagaaagctcctagaatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaacgggccaatgaatgtctactttaatagttatagatgagaaagctcctagaatgaa 440

                                                              
Query: 241 agaatatggaagaggctctttgtgcccaaatactggataatcatagaaatg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatatggaagaggctctttgtgcccaaatactggataatcatagaaatg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)