BAC Information

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BAC

Clone NameMSMg01-276I19
Chromosome5 (Build37)
Map Location 50,907,708 - 51,070,482
singlet/doubletdoublet
Overlap geneLOC100041015
Upstream geneEG433885, LOC666223, Gpr125, EG637307
Downstream geneLOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276I19.T7 (MSMg01no276_i19.b1)MSMg01-276I19.TJ (MSMg01no276_i19.g1)
ACCAG414703AG414704
length724724
length of high quality
(start - end)		344 (381 - 724)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no276_i19.b1 PHD_FILE: MSMg01no276_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:31 2005CHROMAT_FILE: MSMg01no276_i19.g1 PHD_FILE: MSMg01no276_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,907,708 - 50,908,050)(51,070,198 - 51,070,482)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACCAAGACCGCCCACCTAATAGTTTTCTTTCCTAAATAATTCTG
TTTGTTTCCTTGTGGAATTGCTGAGTTCCCAAATAATATCTGTGTATATG
GAAGGGTGAACTCTATGAATAGCCTTTCCACGCATTTCTCACTGGTGGCT
GCCATTGCCTCTCTATAGCCATGGCTGGTCATCTGGAGCTGGCTTAGAAT
AGTCACAGGGACTCTGAGGTGGGATGAAATTTCTCCAAATATCTGCATAT
ACAAAATAAAGGCTTTTAGTTTATGCAATTAGCTTAGTTAAAAGGAGTTA
GAGGTAAAGCCTTTATATGTATTCCATACCTCTGCTTTTTAAACTTTGTT
TCTTTCCCTCCTGGATTGGGGTTCTCAACCTTGGCTGCACATGAGAATCA
GCTGGGAGCTCTAAGAAACTTCAATGTTTAAGCCCAAGACAAATTATGAA
GTAGAATCTCCAGGGGCCAAGCCTAGGCATAAGTACATTTGAAAATCTCC
CAGATGATTCCAATGCATAACCAAGTTTAAGGACCGCTACTCTTAGCTTC
TCTCAAGCAGAAGAAATGAACTGTGGTATTCTATAAAGAGAGTAGTTTGT
AAAAATTATTTTAACATATCCCAGTGGTTTTCTCATCTGCATTATTTTCT
CCTGATAGAACCACTCATATGTAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAGACATGGTGATTTACTCTAAA
CAAACCAAGAAAATTAGACTTTATGCAGACAAGGTTTCATTAGCTCTCAC
CTACACACAAGCATGGATGTGAAATACCTCATGAGTGCAAGAGGCCTGGG
TATTGATTTATCCCGTAATTATAAGACTTTATGAGAAAACACGAGGAAAA
ACTATAGAGTATGTTAAGAAATAGACATTTTAAACTTGTTAATAATGGAA
AATATAAATTAGCAATAACAATAATTTTATATGTAAGATTTTTCTTCTAG
GGGAGAAAAATGTTTTCCTAACCCACCCCGCAGTTGCAATCAACAAATGA
GAATTGGATATCAATAATACACAACCAATGTAGTATAGCTGGTAGCCAGT
TTACAGCTGCATGCTAATTCTTCCTTAGAAGCAAGGCAAAGACTTAAGAA
ATAATAGCAAACTCTCAATTTATCACATTATCAACTCACTCTAATAAGAA
CAGGCTGAAAGGGTTGAAATGAAATGGATTTTTTTTCAGTCCTCATTTGT
GACTATCTAGGAAAATAATTTGGCAAAAGCATTAAAACATTGGAACACTA
AACAAAAGGTTTCAGGGTCCTATCTCATTTAATACTCACACCATACCTGT
GAAGCCATTACAGCCACACTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_i19.b1 MSMg01no276_i19.b1 CHROMAT_FILE:
MSMg01no276_i19.b1 PHD_FILE: MSMg01no276_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:31 2005
         (344 letters)



>mm_chr5_50907508_50908251
          Length = 744

 Score =  640 bits (331), Expect = 0.0
 Identities = 340/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctttttaaactttgtttctttccctcctggattggggttctcaaccttggctgcac 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctttttaaactttgtttcttttcctcctggattggggttctcaaccttggctgcac 260

                                                                       
Query: 61  atgagaatcagctgggagctctaagaaacttcaatgtttaagcccaagacaaattatgaa 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 atgagaatcagctgggagctctaagaaacttcaatgcttaagcccaagacaaattatgaa 320

                                                                       
Query: 121 gtagaatctccaggggccaagcctaggcataagtacatttgaaaatctcccagatgattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagaatctccaggggccaagcctaggcataagtacatttgaaaatctcccagatgattc 380

                                                                       
Query: 181 caatgcataaccaagtttaaggaccgctactcttagcttctctcaagcagaagaaatgaa 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgcataaccaaggttaaggaccgctactcttagcttctctcaagcagaagaaatgaa 440

                                                                       
Query: 241 ctgtggtattctataaagagagtagtttgtaaaaattattttaacatatcccagtggttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtggtattctataaagagagtagtttgtaaaaattattttaacatatcccagtggttt 500

                                                      
Query: 301 tctcatctgcattattttctcctgatagaaccactcatatgta 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcatctgcattattttctcctgatagaaccactcatatgta 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no276_i19.g1 MSMg01no276_i19.g1 CHROMAT_FILE:
MSMg01no276_i19.g1 PHD_FILE: MSMg01no276_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:31 2005
         (285 letters)



>mm_chr5_51069998_51070682
          Length = 685

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagacatggtgatttactctaaacaaaccaagaaaattagactttatgcagacaaggt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 485 tgtagacatggtgatttactctaaacaagccaagaaaattagactttatgcagacaaggt 426

                                                                       
Query: 61  ttcattagctctcacctacacacaagcatggatgtgaaatacctcatgagtgcaagaggc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 425 ttcattagctctcacctacacacaagcatggacgtgaaatacctcatgagtgcaagaggc 366

                                                                       
Query: 121 ctgggtattgatttatcccgtaattataagactttatgagaaaacacgaggaaaaactat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgggtattgatttatcccataattataagactttatgagaaaacacgaggaaaaactat 306

                                                                       
Query: 181 agagtatgttaagaaatagacattttaaacttgttaataatggaaaatataaattagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agagtatgttaagaaatagacattttaaacttgttaataatggaaaatataaattagcaa 246

                                                        
Query: 241 taacaataattttatatgtaagatttttcttctaggggagaaaaa 285
           ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 245 taacaataattttatatgtaagatttttcttctaggggacaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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