BAC Information

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BAC

Clone NameMSMg01-276O19
Chromosome5 (Build37)
Map Location 75,552,639 - 75,552,924
singlet/doubletsinglet
Overlap genePdgfra
Upstream geneRasl11b, Scfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, LOC100039125
Downstream geneLOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276O19.T7 (MSMg01no276_o19.b1)MSMg01-276O19.TJ (MSMg01no276_o19.g1)
ACCAG414970AG414971
length743738
length of high quality
(start - end)
697 (47 - 743)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no276_o19.b1 PHD_FILE: MSMg01no276_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:57 2005CHROMAT_FILE: MSMg01no276_o19.g1 PHD_FILE: MSMg01no276_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTGTTTCCTCTGTTAAAAAAAAAAAAAAAAAAAAAAAGGCTGC
CACCAAGAAAACAGTTGATGCCAACCGCTGACAAAATAAGGGGAAAGGAG
AGCCTTCATCAGTTGATGCCAAATGCTGACAAAATAAGAGGAAAGGAGAG
CCTTCATACTCTGTCAGTGAACGAGTGCAGCCCCTTGGAAAATGATCTGG
TCGGTTCCTTAGAACTGGAGCCAGAGCTATCACGACCTTGGTATTTCGCT
CCTGGGACTATACCTAAGGACATCACATCCAATTAACAGAACCTTTGCAC
ATTCCTATCCACTACTGTTCTCATCACCACAGCTAGTTCATAGAATTAGC
CTAGGTGGCCATGGATGGATGAATGGATAATAACAATGTGGTGCTTGGAC
ACAATGGAATTGTTTTAGTTGTAAAGAAAAATGAAGTTGAGAAATTGGCA
GGAACATTGGACAGGACCAGAAAATGTACATAGGAAGTGGTGTAGGCCCA
GAGAGACAAACACTGCAGGTTTTCTCTCATATGTGGATCATAGCTTTAAC
TTTTAGATTTTCATGTTCAACTTGGAATGTCTGTTGAAACCAGGAAGCTA
GGAGGGGGCTATGGTGGATTGGCAGCACGGGGTCTGCAGAAGGGCAGATG
GTGGAACCCACATAGCCTGAAAGCAGAGGGAGGATAGTCTGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGGATCCAGGGAGATCTTGGGGGA
CAGTAGCCGGCGTGTGCGCTCCCGGCCGGCTCAAGCTTCCTTGGCCTGTT
GCTGTCTTAGACCCCGCGTTACCGAGCAATGGGAATAGTCCTTTCTAACC
AACCGGGCTGCAGGGACCCCGCGGGGGGCGGGTTTACGAGCAGCGAGAAC
AGAGTGGCAGGGAAAGGCGTCGTGGTCTCTCTTGGCAGGGTCTAGGTAGC
CTTCATGCTTGGAGAGGTGGAAAGTCAAAGGGTGTTGTTTCCCCTAAACC
CAAGTGACCAGTTCTGCTACATCTTTGAGACCTGGTCCACAGCGCTATCT
TCCTGGCTCTCAAGGCACGGCTGTGTCTTGATCCCTCTTTGGGCAGTGGT
GATGATAATTATGCTGATGGTGACGATGGCGGTATGTTTGTTCCTCAGTG
AAGTCTCTGGAGGTCCCCAAAGAAATTTAGCATTTTAGATAGGAGTTTTG
TCATTTCTTCTTCCACGCCTAGGAGCTCAACTACAAGTCATCACAAGACC
TAAAAGTAAAGATTAACCTACGATTTTTTTTTAAAGTTGGGACATTTTAA
AATCAGAACTGGTTTCAATGGCGCCTGCAGCTCAGAGACAACAGGACACT
GGTTCTTGAACCAACACTGCCATCTGCTGTCTACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_o19.g1 MSMg01no276_o19.g1 CHROMAT_FILE:
MSMg01no276_o19.g1 PHD_FILE: MSMg01no276_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:57 2005
         (286 letters)



>mm_chr5_75552439_75553124
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggatccagggagatcttgggggacagtagccggcgtgtgcgctcccggccggctcaagc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cggatccagggagatcttgggggacagtagccggcgtgtgcgctccaggccggctcaagc 260

                                                                       
Query: 61  ttccttggcctgttgctgtcttagaccccgcgttaccgagcaatgggaatagtcctttct 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttccttggcctgttgctgtcttagaccccgcgttaccgagcaatggaaatagtcctttct 320

                                                                       
Query: 121 aaccaaccgggctgcagggaccccgcggggggcgggtttacgagcagcgagaacagagtg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaactgggctgcagggaccccgcggggggcgggtttacgagcagcgagaacagagtg 380

                                                                       
Query: 181 gcagggaaaggcgtcgtggtctctcttggcagggtctaggtagccttcatgcttggagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagggaaaggcgtcgtggtctctcttggcagggtctaggtagccttcatgcttggagag 440

                                                         
Query: 241 gtggaaagtcaaagggtgttgtttcccctaaacccaagtgaccagt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggaaagtcaaagggtgttgtttcccctaaacccaagtgaccagt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)