BAC Information

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BAC

Clone NameMSMg01-276P06
Chromosome5 (Build37)
Map Location 29,046,261 - 29,046,547
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp6, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276P06.T7 (MSMg01no276_p06.b1)MSMg01-276P06.TJ (MSMg01no276_p06.g1)
ACCAG414990AG414991
length770742
length of high quality
(start - end)
315 (46 - 360)296 (127 - 422)
definitionCHROMAT_FILE: MSMg01no276_p06.b1 PHD_FILE: MSMg01no276_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:59 2005CHROMAT_FILE: MSMg01no276_p06.g1 PHD_FILE: MSMg01no276_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATATAGACTGTTGAGGGCCATGGGGTCTGGGGAGATGCTCAGTT
GGTAAGGTGCTTTCTGTAGTCCACCAGGATTTGAGTTTATTGTCCAGGAC
CTATGGGAGAAAGCCATGGGCATGATGACTTCTGGCTTTCACACCAACAC
ACACATACATGCTAATGCAGAAGCACACACACACACACACACACACACAC
ACACACGTACACTCACACAAATAAAATAGAAACTAATACTTAAAGACATA
TTTTTTAAAGGACCAGATAGACTTAAGTGGCCTGAAGGTCCCCACAGTCA
CCAACGCAGTTTTCTTTTTCTACCCCCCCCCCCCAAGCCAGGATCAGAGT
ACTGATCCTAGTCTGTAAGAAGCCACAAAGAAATGTGTGTGTGTGTATGT
GTATATATGTGTGTGTATATGTGTGTGTTATATGTGTGCGTATATGTCTT
GTTTTCTCCCCTCCTTATACCCCTTTTCCTCTCCTCCTTTTTTACCTTCC
CTACCCATCCTTTTTTCCTTATTTCCCTTTTACTTTCTCTTCTCTCGCTC
GCATTTTCCTCCCCCCTTCTTACTCTTCCCTTTATTTTTTCCTCCTTCTT
CCCCCTTTTCTCTCCCCCCCTCCTTCCGGCTTCTCTTTCCCCCTCTAAAA
TTTTAACCGCTGTTTTTTCTGCCAATCTTATTTTCTCCTCACCCACCCTC
CTTCTCTAATTAGACGACCC
CGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCTTGTTCCTTGGAGCACGGGTTCCC
TGGTACTTCAGGCCCTTTTACCCCGGTTGGAAGGCAGAGGCTTAGCATTT
CACTGGGCCACCAAGCACAGATTAGCTCTTGCTGCCCTCCCTGAAGGGCA
CTTAGGCAGAGCTCCCTAGCTGGCTGGACGCTGGTTTTCTTGGAGGTTAA
ACATCACTTGTACACACCAATCAATGGCCATTGCCAACCTGCTCTTGCCT
TCCTCTGCTCTGGTCCCGGGGGTTTCTGATGTGTCTTCCCAGGCTGATGT
CCTGTGCGTGCTGTCTCTTTCCCACTCCTCTTCACCCCCCAATCTTCCTA
CTATTCCCCTTTGCCTTTTATACAGATCCACCTCTTTCTCTCTCTTAGGC
TTTATGGATATATAACATTGTGTGTGGCGGCGTGCGTATATATATATATA
TATATATATATATATATATATGCATGTATCTATATGCCCCGTATTGTTCT
GTCGACTTGACCCTATATACCAATCTGTTTGAATATTTATTCTCCCCCCG
ATGACCCTATTTCCCGAATAAGTCCTATTTCTCCGGTATCCAAGCTAACG
CCTCGTCTTTCTTTTCTTGTCCTAAACCTCTTCCCACCCTCACTTCATTT
TTGTCCCGAACCTCCTCTCCTTCCCTATTTTATCCCTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_p06.g1 MSMg01no276_p06.g1 CHROMAT_FILE:
MSMg01no276_p06.g1 PHD_FILE: MSMg01no276_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:59 2005
         (296 letters)



>mm_chr5_29046061_29046756
          Length = 696

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggaaggcagaggcttagcatttcactgggccaccaagcacagattagctcttgctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttggaaggcagaggcttagcatttcactgggccaccaagcacagattagctcttgctgcc 428

                                                                       
Query: 61  ctccctgaagggcacttaggcagagctccctagctggctggacgctggttttcttggagg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 427 ctccctgaagggcacttaggcagagctccctagctggctgggcgctggttttcttggagg 368

                                                                       
Query: 121 ttaaacatcacttgtacacaccaatcaatggccattgccaacctgctcttgccttcctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttaaacatcacttgtacacaccaatcaatggccattgccaacctgctcttgccttcctct 308

                                                                       
Query: 181 gctctggtcccgggggtttctgatgtgtcttcccaggctgatgtcctgtgcgtgctgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gctctggtcccgggggtttctgatgtgtcttcccaggctgatgtcctgtgcgtgctgtct 248

                                                          
Query: 241 ctttcccactcctcttcaccccccaatcttcctactattcccctttg 287
           |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 247 ctttcccactcctcttcaccccccaaccttcctactattcccctttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)