BAC Information

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BAC

Clone NameMSMg01-276P07
Chromosome5 (Build37)
Map Location 28,855,102 - 28,855,207
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp6, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh
Downstream geneLOC100039258, Rnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276P07.T7 (MSMg01no276_p07.b1)MSMg01-276P07.TJ (MSMg01no276_p07.g1)
ACCAG414992AG414993
length766766
length of high quality
(start - end)
106 (128 - 233)74 (186 - 259)
definitionCHROMAT_FILE: MSMg01no276_p07.b1 PHD_FILE: MSMg01no276_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:59 2005CHROMAT_FILE: MSMg01no276_p07.g1 PHD_FILE: MSMg01no276_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATAGACCGTTGAGGGCCATGGGGTCTGGCGAGATGCTCAGTTG
GTAAAGTGCTTTCTGTAGTCCACCAGGATTTGAGTTTATTGTCCAGGACC
TATGGGAGAAAGCCATGGGCATGATGACTTCTGGCTTTCACACCAACACA
CACATACATGCTAATGCACAAGCACACACACACACACACACACACTGACA
CACACGTACACACACACAAATAAGGATATGAAGCTAATACTTATAGACGT
ATTTTTTAAAGGACCAGATACTACTTAAATGGCCTGAAGGTCCCCACAGT
CACCAACGCTTTTGTTTTTCTCCCCCCCCCCCCCAGAAGTCAGGATCAGA
GTACTGATCCTAGCCTGTAATAAGCCACAAAACAGAGTGTGTGTGCGTAT
GTGTGTATGCGTGTGTGTAACACTGCTTGCCTCTGTCGTCTTTCCATCCC
AGCCACTTAACTGATGGTATTGATGGATGGCTTTTGGAATCATGGTTTCC
CGCATACTGGAGAGTTCCTAGGATTGATCTGTTCATTCTCTGGCTTCCCT
TCACCCAGATGTTGACACTCTGATGTGTGGGCACGATGCATTAGAGGTCT
CTTGTGAGCGCTCTTACATCCTTGGGCACCTCTACATTCCCTTCCATGTA
TTCCCCCTCTTCCGTTCCTCTATTCCTGGTAGCTTCTGAAAGTTATTATG
GCGAACTTCCCATTCA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTTGTTCCTTGGAGCACGGGTTCC
CTGGTACTTCAGAGCCCCCTACCTTGGTTGGAAGGCAGAGACTTATCATT
TCACTGGGCCACCAAGCACAGATTAGCTCTTGCTGCCCTCCCTGAAGGGC
ACTTAGGCAGAGCTCCCTAACTGGCTGGACGCTGGTTTTCTTGGAGGTTA
AACATCACTTGTACACACCAATCAATGGCCATTGCCAACCTGCTCTTGCC
TTCCTCTGCTCTGGTCCCGGGTGTTTCTGATGTGTCTTCCCAGGCTGATG
TCCTGAGCGTGTTGTCTGTTTCCCACCCCCCCTCAAGGCACATACTTCCT
ACTATTCCCCTTTGCCTTTTAAACAGATACAACTCTTTCTCTCTCTTAGG
CTTTATGGATATATAAAATTGTGTGTGGAGGTGTGTGTATATATATATAT
ATATATATATATATACATACACACACACACACACACATACATTATTGGAC
AGAGATATAGAGAGAGTTGATCTATATAATCTTTCTTTATATAATAAATA
AATACAAAAGTTCTTATTTTTAGCTGTGGGCTTATATATAAAATTATTAT
TTAAAAAAAGATTATTGTAATAATTTTTGTTAAAAATAAAGGAATTGGTG
GTCAAAAAATTCCGATAAAGGGGGACTCATTTTCTTATGGGGNGGNGGNN
TGGTTAAGGTTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_p07.b1 MSMg01no276_p07.b1 CHROMAT_FILE:
MSMg01no276_p07.b1 PHD_FILE: MSMg01no276_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:59 2005
         (106 letters)



>mm_chr5_28854902_28855407
          Length = 506

 Score =  190 bits (98), Expect = 3e-53
 Identities = 104/106 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgagtttattgtccaggacctatgggagaaagccatgggcatgatgacttctggctt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 atttgagtttattgtccaggacctatgggagaaagccatgggcatggtgacttctggctt 260

                                                         
Query: 61  tcacaccaacacacacatacatgctaatgcacaagcacacacacac 106
           ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tcacaccaacacacacatacatgctaatgcagaagcacacacacac 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)