BAC Information

Click to search

BAC

Clone NameMSMg01-276P23
Chromosome5 (Build37)
Map Location 5,010,684 - 5,010,837
singlet/doubletsinglet
Overlap genePftk1
Upstream geneAkap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276P23.T7 (MSMg01no276_p23.b1)MSMg01-276P23.TJ (MSMg01no276_p23.g1)
ACCAG415023AG415024
length790814
length of high quality
(start - end)
162 (103 - 264)162 (185 - 346)
definitionCHROMAT_FILE: MSMg01no276_p23.b1 PHD_FILE: MSMg01no276_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:02 2005CHROMAT_FILE: MSMg01no276_p23.g1 PHD_FILE: MSMg01no276_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATATTAAAGAAAGCAAAATTTTCATCTATTTTTCAATTTAGATANATAA
AAAACTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATGCTTCATAAAGGCAAAAAAAAAAAAGCTAGAACTC
AATATGAAAATGGACAAACATATTTTATACCATTTCCAGCAGTTCATTAA
GTCACCAAGTAACTAATTAGAAACAAGTTTTTCTGAGAAGCACTTTGTGC
AGAACTTACCAGAAATATCCGTTCAAGTTGATCCTGAATGCCTTTCATTC
CTGGAAACGCAGCAACTCCTTGGATCATCTCAACGAAGATACAGCCAACT
CCCCTGAACAGAGAAAAATCATTATCAATGCTGCTATAATTCTGCTTAGA
AGATCAAATCAGAGATTTCGTTGTTCTGCCCCCCCCCCCCCAGTCTATGA
ATAAATATCTCTCGATGATCCTCCTCAGCTAAAAAAAAAACTAGACCCTC
TCTCTGTGTCAGACTGTATCCGTTGATCCGTTAGGACACTAAACATGCTC
AACCTAACTGTATCCTGAAAAAAAAGCATATGAATGACATAATAACTAGG
CACTCAGTAATATCCCTCGTGTCGCCTGTCGACAATCACCCTGTTATGAT
ATTACGCAAACCTCTGGTATTGTATATCCTGACCCTTCTCCATTTCTTGT
TACTTATCAAATTATTCTTTATAAATGGACTTTCCCCATGACATAGTAAC
CGAATTTGTATCTATAAAAAATAACATATGATATAGATTG
TTTCTTTTCNCCCNTNTTTCTTCTTTTCTTTTGTTGATCTTTTTTATAAA
TTTNCCCTACTAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATA
CCGAATGGCTGAGAAGCACCTGAAAAAATGCTCAGCATCCTTAATCATCA
GGGAAATACAAATCAAAACAACACTGAGATTCCACCTCACACCAGTCAGA
ATGGCTAAGATCAAAAATTCAGGTTATAGCAGATGCTGGTGAGGATGTGG
AGAAAGAGTAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAAA
AACTCTGGAAATCAGTCTGGCTGTTCCTCATACTATTGGACATAGCACTA
CGGGAGGATCCCGTAATACTTTTTTTGTTCACCCCCCCCCCACCATGTTT
CCACTGTTAATAAGGACACATGCTATACTATGTTCATAAAAAACTTATTT
ATAGTAGCCGGAAGCTGTAAAGAACCCAGATGTCTCTCATCAGAGGTATG
AATATTGAATATGTGTTACATTTTACTCAATGAAGTTCTACTCTTTTATT
TATAAAGAATGAATTTATGAAATTTCCTAGTCTAAATGCATGTAATTTGT
ATGTTCATTTAATACTTGACTTGATATAATACAAAAGAAAAAAAAAACTC
CCAATGACCCTTATACTCTACTGATTAGGGGGGACCTTAAACTCTAATAA
CTTATTAATTCTCCTCCTCTCCTTTTTTGCTTATAATCAATGAATCTTTC
TAGAAAAATACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_p23.b1 MSMg01no276_p23.b1 CHROMAT_FILE:
MSMg01no276_p23.b1 PHD_FILE: MSMg01no276_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:02 2005
         (162 letters)



>mm_chr5_5010476_5011037
          Length = 562

 Score =  232 bits (120), Expect = 7e-66
 Identities = 147/158 (93%), Gaps = 4/158 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgcttcataaaggcaaaaaaaaaaaagctagaactcaatatgaaaatggaca 64
           ||||||| |||||||||||| |||||||||    ||||||| ||||| ||||||||||||
Sbjct: 209 gaattccctgcttcataaagccaaaaaaaa----gctagaaatcaatgtgaaaatggaca 264

                                                                       
Query: 65  aacatattttataccatttccagcagttcattaagtcaccaagtaactaattagaaacaa 124
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacatattttaaaatatttccagcagttcattaagtcaccaagtaactaattagaaacaa 324

                                                 
Query: 125 gtttttctgagaagcactttgtgcagaacttaccagaa 162
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttttctgagaagcactttgtgcagaacttaccagaa 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)