BAC Information

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BAC

Clone NameMSMg01-277A23
Chromosome5 (Build37)
Map Location 13,006,368 - 13,006,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277A23.T7 (MSMg01no277_a23.b1)MSMg01-277A23.TJ (MSMg01no277_a23.g1)
ACCAG415066AG415067
length746745
length of high quality
(start - end)		360 (387 - 746)354 (386 - 739)
definitionCHROMAT_FILE: MSMg01no277_a23.b1 PHD_FILE: MSMg01no277_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:07 2005CHROMAT_FILE: MSMg01no277_a23.g1 PHD_FILE: MSMg01no277_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCATTTACAGCATTCCAGATGTGTTTTTTATGTTGCTTGATTTA
CTTTCTGATTAGTTGTTCTAACTCCAGACATCTGTTGCCATTGTGCAGCG
GAGAATATTTTAATGGTATTACTAAATTCCATGCATCTATCAGTGCCTAA
TCATGTATCTAATGCTGAAACAACTCCAGGGTAGGCTTCTCCACACAGAT
GTGAAAACTAGACTGCTGATCATGAGGTTCTTCAAGGAAAAACAGCATTT
ATGGAAAGCAATTTCTTTCTATCTGAATTTAGGTAGGAAAAAAAAGTGCT
ACATTTGTTCAAAATTTGTTCATACCCCCTCGCGGCTCCATTTGAGACTT
TGAGGTAGCAACTGTTGTCTGAGGGTGTACTGAATGTTGCAGAAGTATGA
TTGCATTATTGATTACTCTAGATCTCGGTTTTCTTGGAACTTTGGGAAAA
TCAGTCAGAGTATGTCCAATGTCTAATAACAAATTAAGGAAGAACTAACA
CATATCAGGCTGACTAGAAAAATATTCGTCTAGCTATCCTGAAATAAATC
ACAGAGTCCTTTCATTGTTATTACATTATCCAACTTTATGGAATGCATGT
CTGCTGAGGAATGTTAGCATGCTTTCTGCCAATCCAGGCCAACTCTCTTT
ACTACTGATAGAGAGTATATGAAAAGATGCAGCGATGAAAGGAAGN

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCTCGTGGCTCATCCAAAGCCTGTA
TTCCCTTCTATCTTTAAGAACAATTAAGCCAAACTTTAGAATTATATCCT
TTGATAACTTGCTTGTAGGAAGCAGACAGCTTTAGCTTTTATTGTCTGGC
TCTTTGCCCTGGAGCAGCCATTCTTCCTCCTTTCACAGCAGGGGATCCCA
GCATCTGAGAGCTGAAACTGCCCCTATGTTCTTTTGTTTAAGTTTCCCAA
GTGCTGGAGACACCACATTGCTCACTCCTCTCCCTGAGAAGCCAATTTTC
CCTCTTCCTAGACTTATATCAATGTCCGCCACGCGATCAATCCAAGAATT
TCTAAATTAATAGTGGGTTCTCTTTTTCCACTTTGCTTGCCATGTGTTCC
GTGGAGCTTTGTCCAGGAGGGGAGCCATGCTACCAAACCCTCCCAGCTTC
CCTTGACTCCATGGATAAAGACACAGACACACAGTTAAGTTAGGGCAGGT
GGGAGGCACAGAACATTTTTTTTCTAGGCAGGAGATATTAGCTGGTGTAG
GGGCTGTTCTGATGCTAAGCTTCTCTTCCCCAATTGGTTCTTGATTTGTC
AGTAAAGAAAGCCATGGGCCAATTGCTCCAAGCAACCATGTGACATCTTG
AGAGGAGAAGTTGGCTGTGGCCACTCCTATTTTGTTTGTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_a23.b1 MSMg01no277_a23.b1 CHROMAT_FILE:
MSMg01no277_a23.b1 PHD_FILE: MSMg01no277_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:07 2005
         (360 letters)



>mm_chr5_13006168_13006928
          Length = 761

 Score =  665 bits (344), Expect = 0.0
 Identities = 356/360 (98%), Gaps = 1/360 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatttgagactttgaggtagcaactgttgtctgagggtgtactgaatgttgcagaagt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 tccatttgagactttgaggtagcaactgttgtctgagggtgtactggatgttgcagaagt 501

                                                                       
Query: 61  atgattgcattattgattactctagatctcggttttcttggaactttgggaaaatcagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgattgcattattgattactctagatctcggttttcttggaactttgggaaaatcagtc 441

                                                                       
Query: 121 agagtatgtccaatgtctaataacaaattaaggaagaactaacacatatcaggctgacta 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 440 agagtatgtccaatgtctaataacaaattaaggtagaactaacacatatcaggctgatta 381

                                                                       
Query: 181 gaaaaatattcgtctagctatcctgaaataaatcacagagtcctttcattgttattacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaaaaatattcgtctagctatcctgaaataaatcacagagtcctttcattgttattacat 321

                                                                       
Query: 241 tatccaactttatggaatgcatgtctgctgaggaatgttagcatgctttctgccaatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatccaactttatggaatgcatgtctgctgaggaatgttagcatgctttctgccaatcca 261

                                                                       
Query: 301 ggccaactctctttactactgata-gagagtatatgaaaagatgcagcgatgaaaggaag 359
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 ggccaactctctttactactgatatgagagtatatgaaaagatgcagcgatgaaaggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 761
Length adjustment: 9
Effective length of query: 351
Effective length of database: 752
Effective search space:   263952
Effective search space used:   263952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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