BAC Information

Click to search

BAC

Clone NameMSMg01-277B14
Chromosome5 (Build37)
Map Location 151,658,693 - 151,817,918
singlet/doubletdoublet
Overlap geneLOC100040180, Kl, LOC667510
Upstream geneLOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin
Downstream geneStard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277B14.T7 (MSMg01no277_b14.b1)MSMg01-277B14.TJ (MSMg01no277_b14.g1)
ACCAG415094AG415095
length732738
length of high quality
(start - end)
310 (43 - 352)279 (77 - 355)
definitionCHROMAT_FILE: MSMg01no277_b14.b1 PHD_FILE: MSMg01no277_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:10 2005CHROMAT_FILE: MSMg01no277_b14.g1 PHD_FILE: MSMg01no277_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,817,619 - 151,817,918)(151,658,693 - 151,658,971)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGTTCTCCATTCTTTCCTCTGTTCAGAAAAGTGGATGGTATCTTTGG
TGTGCATAGGTATGCCCCACTATAGAATCCCACTTAAGGTGTTGCACATC
ACATATCCCCTGAGTCTGCTGCTCTGTGACTGCTTCTATCGGGAAGTTTC
TTGTTTTCTTTCCATTCTTAAGGTTTACAAAGTCCCCCCAACTAGTGAAA
GAAAGATGAAATTTCAAGACCTGTAAGTCATATAAAGTACTCAGAAATTG
CTGGTTGTTGGTGAGTCTAGAGGCTGCCTGGGGCTGAAAACAAACCTGGT
TATGTTTTCGTAGTTCACACATTCCTGGGAACAGCTTGACCATTAAGATA
AAGAAGAATGTAAGAACATAACAGGGCTCTCTGAACTGAGTCAAATTGAC
CAGATACTCTGCTAAATTGATAAACATCCAATTCACAGAACTCTGACACC
CTGATCTGCATGTACTTATAATTTTTCTGCTGATGTATGAATAAGCCAAT
AGCGTGCCGCTATGCTGAATTCCCCACCCCTAAGCCCCTTACCCCGTAAA
AAGCCCTAGCTTTCGAGCCTCGTGGCCGACATCAGCTATCTCCTGTATGG
GATGCATGTCAGTCCGGAGCTCCGTCATTAAACTACCTCGTGTGTTTACA
GCATGTGCGATTCTTCGTCGTTCTTTGCGTGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAACAGACAGACAGGTGACATTT
GCAGTGACTGGGGGCTGTGCCTCAGCTGATGAGAGAAGAACATGGACATG
TGGATTATAATGCTTGACTATCAGTAAAGCATCCTACAAACACTTAAAAG
AACCATCCAGGATGGCTCCCATAGCCAGACACACCCTAGGGAGAGTCAAA
GACATGAGGATGCCTTTCAGGTTTGGTAAATGAAACTTAGGTAGCCAGAC
CCCAGAAACCTACAGAGAGGAAATTGGTAGGTAAAATAAAAACAAAACTC
AAAACATATATATAACCAACACCACACAACTAAGGCAGTGCAGGCTGTTA
GATTTATTTCCCATGATTGTAGCCAGCCTCTGGAAGAAATGAGCCAGTGA
TGTAAGCTAACATGGATACCAACTAATGGAAACCCGGGGTGGTATGATTG
GAAGCACACAGCAGCAAAAGCATTCTAACTAAAAGTCCAGAAAGGTGAAG
ACAGGAAAAGGAGCAGAGGGTCGCATTTTCACGAGGCATTCCATAGTCTG
CCTGCCCCACTTTAATATAGACAGTGTTTTGTTTTGTTTTGTTTTTTTTT
TTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA
ACTCACTTTGTAGACCAGGCTGGTCTCGAACTCAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_b14.b1 MSMg01no277_b14.b1 CHROMAT_FILE:
MSMg01no277_b14.b1 PHD_FILE: MSMg01no277_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:10 2005
         (310 letters)



>mm_chr5_151817516_151818225
          Length = 710

 Score =  526 bits (272), Expect = e-154
 Identities = 293/300 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagttctccattctttcctctgttcagaaaagtggatggtatctttggtgtgca 64
           |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattccagccctgcattctttcctctgttcagaaaagtggatggtatctttggtgtgca 344

                                                                       
Query: 65  taggtatgccccactatagaatcccacttaaggtgttgcacatcacatatcccctgagtc 124
           |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 343 tagggatgccacactatagaatcccacttaaggtgttgcacatcacatatcccccgagtc 284

                                                                       
Query: 125 tgctgctctgtgactgcttctatcgggaagtttcttgttttctttccattcttaaggttt 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 283 tgctgctctgtgactgcttctatcgggaagtttcttgttttctttctattcttaaggttt 224

                                                                       
Query: 185 acaaagtccccccaactagtgaaagaaagatgaaatttcaagacctgtaagtcatataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 acaaagtccccccaactagtgaaagaaagatgaaatttcaagacctgtaagtcatataaa 164

                                                                       
Query: 245 gtactcagaaattgctggttgttggtgagtctagaggctgcctggggctgaaaacaaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gtactcagaaattgctggttgttggtgagtctagaggctgcctggggctgaaaacaaacc 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no277_b14.g1 MSMg01no277_b14.g1 CHROMAT_FILE:
MSMg01no277_b14.g1 PHD_FILE: MSMg01no277_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:10 2005
         (279 letters)



>mm_chr5_151658493_151659171
          Length = 679

 Score =  501 bits (259), Expect = e-146
 Identities = 274/279 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaacagacagacaggtgacatttgcagtgactgggggctgtgcctcagctgatgagaga 60
           |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||
Sbjct: 201 taaacagacagacaggtgacatttgcagtgactgggggctgtggttcagccgatgagaga 260

                                                                       
Query: 61  agaacatggacatgtggattataatgcttgactatcagtaaagcatcctacaaacactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacatggacatgtggattataatgcttgactatcagtaaagcatcctacaaacactta 320

                                                                       
Query: 121 aaagaaccatccaggatggctcccatagccagacacaccctagggagagtcaaagacatg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagccatccaggatggctcccatagccagacacaccctagggagagtcaaagacatg 380

                                                                       
Query: 181 aggatgcctttcaggtttggtaaatgaaacttaggtagccagaccccagaaacctacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggatgcctttcaggtttggtaaatgaaacttaggtagccagaccccagaaacctacaga 440

                                                  
Query: 241 gaggaaattggtaggtaaaataaaaacaaaactcaaaac 279
           |||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gaggaaattggtaggtaaaataaaaacaaaacccaaaac 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)