BAC Information

Click to search

BAC

Clone NameMSMg01-277K04
Chromosome5 (Build37)
Map Location 84,244,610 - 84,244,899
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2, LOC100039608
Downstream geneLOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277K04.T7 (MSMg01no277_k04.b1)MSMg01-277K04.TJ (MSMg01no277_k04.g1)
ACCAG415480AG415481
length736748
length of high quality
(start - end)
295 (69 - 363)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no277_k04.b1 PHD_FILE: MSMg01no277_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:48 2005CHROMAT_FILE: MSMg01no277_k04.g1 PHD_FILE: MSMg01no277_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATAAAGTTCCCTTTAAACTTCTAATGTCATTCTTCACTGTAACT
AAAATAAAAATAATAATTCTTATACTTTTATGGAACCCTCAAGTACCCTA
AATAGCCAAAGCAACTATAAACAGAAAGAACAATATTGGTATTTTCACAA
TGCCTGACTCCAAATTATACAATGTAGCCATAATGACTAAGACAGCATGG
TGAAGAAACAAAAGCAGGCATGTGGACCAATGGAATAGAAAAAGGAATCA
GAGATAAACCCCCACAGGCATGCTCATTTAATTTTTGACAAACTATCAAA
AGAATACACAGGGACATATAAAGCCACTTGCCCTCATTCAAGCAGAATTA
AATATACTCAAATCTCTCATGGTGAGCAATATCAACTCACAATTGATCAT
AGAGGTTAACATAAGATCAGAAAGGCTAAAACTTCTAAAAGAAAACTCTT
CTACATGTAGGCACAGGCAAATACTTTCTAAACAACCCTAAGAACAAAAG
AAATGTTCTCCCAAATTGACAAATGAAAATTAAAATTGTTCTTCCACATC
CCAAGCAAGCCATGAGGGAGACTGAATCCAAACCTTTCTTATTGGGGAAA
AAAAGGTTGGGCAACTGTACCTTCTCATAAAAAGTATAAGGAAGGAAAAT
GCCTCCTCTATGGCCCCCCAACGATAGAAAACAAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACAATATACATTTTAAAAGCGT
GATTATTTAAATGACGAGATTTTTCACCCTTGCCATTCACTAAAATTCTC
CATGACTCTTACATTTCACAAGTATAAAAGCTTATTTCTAGAGCACTCAA
GCCCACTAGATGCTTGTAGCTGCTACATAAAGGCTTTGAGTATCAATCTT
TTCTCTCTGGTCAAGTTCTACTTTCCTAAAGAAGTTCAGAATAGATATCA
ACATTATTTTGCCAACATTCTTTTGATGATACTATAATGAAGTTAGGATA
TTGCTGTTGAAGCACTTATTACAGTACGATATTCAGATGTGCTTTTATTT
AACATATGTATGTATATATACATGTATATTATATCTCATTCTCTATCAGT
GTTTAGCTGATGATCCAGATTACAGTGATTATCTGACTAATTAATCAATT
AAAAAGATGAACTCAATACAATGACATATAGAAAACTCCAGTGGAACTAG
CTATTTCTTATCATTATTCTAAGAGTTAATAAAATAATTCAGTTCATGAA
AATTATTCATATTATCACTGTAGATAGAATCAGCACAGAGGCAGAAATTA
ATGTGTCTTCTAATTTCCTGTCATAAATATTCAGTGACATTTGGTGAGAT
TGCAAATGCTTTTTAGATGCCTTCATAGTTTATACGTTAAAATCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_k04.g1 MSMg01no277_k04.g1 CHROMAT_FILE:
MSMg01no277_k04.g1 PHD_FILE: MSMg01no277_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:49 2005
         (291 letters)



>mm_chr5_84244317_84245007
          Length = 691

 Score =  449 bits (232), Expect = e-130
 Identities = 277/292 (94%), Gaps = 4/292 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacaatatacattttaaaagcgtgattatttaaatgacgagatttttcacccttgccat 60
           ||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||| ||||
Sbjct: 583 aaacaatatacattttaaaagtgtgattacttaaatgaagagctttttcaccctttccat 524

                                                                       
Query: 61  tcactaaaattctccatgactct-taca-tttcacaagtataaaagcttatttctagagc 118
           |||||||||||||||||||   | || | | | | |||||||||||||||||||||||||
Sbjct: 523 tcactaaaattctccatgagaatata-agtat-aaaagtataaaagcttatttctagagc 466

                                                                       
Query: 119 actcaagcccactagatgcttgtagctgctacataaaggctttgagtatcaatcttttct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 actcaagcccactagatgcttgtagctgctacataaaggctttgagtatcaatcttttct 406

                                                                       
Query: 179 ctctggtcaagttctactttcctaaagaagttcagaatagatatcaacattattttgcca 238
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 405 ctctggtcaagttctactttcctaatgaagttcagaatagatatcaacattattttgcca 346

                                                               
Query: 239 acattcttttgatgatactataatgaagttaggatattgctgttgaagcact 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acattcttttgatgatactataatgaagttaggatattgctgttgaagcact 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)