BAC Information

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BAC

Clone NameMSMg01-277K05
Chromosome5 (Build37)
Map Location 140,199,253 - 140,199,431
singlet/doubletsinglet
Overlap geneMicall2
Upstream geneBC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217
Downstream geneInts1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277K05.T7 (MSMg01no277_k05.b1)MSMg01-277K05.TJ (MSMg01no277_k05.g1)
ACCAG415482AG415483
length767764
length of high quality
(start - end)
318 (45 - 362)182 (144 - 325)
definitionCHROMAT_FILE: MSMg01no277_k05.b1 PHD_FILE: MSMg01no277_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:49 2005CHROMAT_FILE: MSMg01no277_k05.g1 PHD_FILE: MSMg01no277_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTATTCCCCAGTGGCCTCAAACTCATAGACATCCACCTGCC
TCTGCCTCCCAAGTGCTGGTTTTAACGGTGTGTGCCACCATGCCCCGCAT
GTATCACTTCCTATTTGAGCCACTCTATCCCTCCTTTCTGGCTACCTGAG
CCAGGGACCCTTTGTATAATTACCCTTTTTGCAGAGGGGGGGGGAGAGAG
AGAGAGAGAGAGAGAGAGGCAGGGGAGAGGGGAGAGAGAACGGAGCACGA
ACACATGAACTATCTCTTGAAGGTTTTTTTTTTAACTTATTTATTTGATG
TATATGAGTACATTGTTTGTGNTTTCCGAACAGAACCCCCAGGGNATGAA
ATGNAATTTTAGATGGTTGTGAGNCAAAAAAAAAAAAAAAAANAATTGGG
GGGGGTGGGGCTGNAATTATANTTAGTGTTTTTAATTGGTGAATTATATC
TTNAGTNTGAGAAATGTNTCTTAAATATGAATTGATTAATTATTGGANAT
AATTAAGTTGGNTANATTGGTAAAGGNATGGATAATAGTGTTAGTNTTAA
TTGGGATTTGGTAAAGAATTTTTTAAGAATTTTTAGAAGTTGGTGTGAGA
TTTTTAGAATAAGATGATAATATAGTTAGAGATGAGTAATGGGGAAAGTA
TGAAGTAATTGTGTATTGATTATGTGGAGATGTGGTATTTTAGTTTGAGT
TTATTTAATTGATATTT
CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCGAAAATAGGGCTTAGAAGNAGGGNTGGCNTCANN
GNCGGGNGAAATCGGGTTTTAAGCCCCGTGGTCTGNCAGAGGNAGATGCT
AAGAAACAGGTCACAGTGTCCGGTCAGAGACCCTTCCTCTGTGCCAGGAA
GCTTCCCCATCAATTTAGGTCACTCAAGTGGCGGCAGCTGTCTCCTGGGA
CCCGCATACCGCAAGTGGATGGACAGACAGTCACTCTTTAACCAGCTTCC
CCTGGGATGCCAGCAGGCTCTGTTTTTTTTCTCTTGNCAACACGGGGCTA
GGCAAAGCAGCTTTTTGGTGGTCTCCCCCCCCCCCCCAAGGGGAATGNNA
GGGNTTGGTATGGNAGGANCGNGGAGACAGGNGACCNTAGAATAACGGGT
GGGTGCCTTCTACTGTCCAGGCTGCTTGGGGCCCTACCTTGGGTACTTCC
TAGGACCTTGTGGTCGCATGTGGACTCGTTTCTGAAGCCCTCCAGAGGAC
TAGTGAGGGCTTCTTTTCATTCCACGAATGAAAGATGGAATGGTTGGCCC
TGCCTCCTTGCTGAGAGTCCTTCCTGTGACCTGAAGCCTCTCTGCAGTCA
CAGTGTCTAGCCCACATTGTCTGTGATCATCTAGGAAGTATGTGTTTATC
AGCTGCTCAGAACAGCTCCCTCTGAAGGAGGTGCTGTGAAAACATAAGCG
TTGAGCATTTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_k05.g1 MSMg01no277_k05.g1 CHROMAT_FILE:
MSMg01no277_k05.g1 PHD_FILE: MSMg01no277_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:49 2005
         (182 letters)



>mm_chr5_140199053_140199634
          Length = 582

 Score =  339 bits (175), Expect = 9e-98
 Identities = 178/179 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgctaagaaacaggtcacagtgtccggtcagagacccttcctctgtgccaggaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agatgctaagaaacaggtcacagtgtccggtcagagacccttcctctgtgccaggaagct 320

                                                                       
Query: 61  tccccatcaatttaggtcactcaagtggcggcagctgtctcctgggacccgcataccgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 319 tccccatcaatttaggtcactcaagtggcggcagctgtctcctgggacccgcagaccgca 260

                                                                      
Query: 121 agtggatggacagacagtcactctttaaccagcttcccctgggatgccagcaggctctg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agtggatggacagacagtcactctttaaccagcttcccctgggatgccagcaggctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)