BAC Information

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BAC

Clone NameMSMg01-277M16
Chromosome5 (Build37)
Map Location 151,856,319 - 151,856,555
singlet/doubletsinglet
Overlap geneStard13
Upstream geneRxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510
Downstream geneLOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277M16.T7 (MSMg01no277_m16.b1)MSMg01-277M16.TJ (MSMg01no277_m16.g1)
ACCAG415593AG415594
length747750
length of high quality
(start - end)
238 (127 - 364)277 (440 - 716)
definitionCHROMAT_FILE: MSMg01no277_m16.b1 PHD_FILE: MSMg01no277_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:59 2005CHROMAT_FILE: MSMg01no277_m16.g1 PHD_FILE: MSMg01no277_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCTCCCCATTTCATAGAAGTTTTTTTTTTTTTTTTCCTTTTCTCTCT
TTTTTTTTCCCCAAGTTATGGTTGCTTTCATTTATAGCAACAAGCAAGAG
ATACCAGGGCATGGCAACCATACACATGTATTTCTCTGGGTATCTATGAG
AAAGAGAAATGACCACTGGCCACTGATTACTGGTCTGGCTACTCAGAAAC
ATTCCACCTTGCTCTTAAAGAAGTGAGCTAATCTGTATGCCACTGGGGAG
CGAGGAGAGTGGAGAGCAGAAACTCAAAGTCTGGGTGTCGAGAACATGGT
GCCTTGATATTGATGTCCAGGATCCCAGGAAACCTCGGTTGTGGTTTGGA
TAGGGCGAGTCCTGGGTGAGAGGGCGCTAGAAGTGCTGAACCTAACCTAC
GTGTTCATTGTACCATTGTTCAACTCACTCATCCCTCTTTGGGTCCTTAT
TGCTCTGTTAGGAAGCAGTCAAACTGCTAAAAGTGAGAGGTTGGGATGGG
GTGTAGGAAAAGGGTCTGGTATCTCATTAAGATAGCCACACACTCCATAG
TAGGCAAGGTGACAAGGAAAGAAAGTTACTTCTGCTGGAGCTTTTACAAC
TACTCTGAAATGGGCACAGTGTTCCCATGCCTCTTTGTCATTAAGAAATC
ACTCTTACTTTCTTAACCCACCGTTTGGTTTAATACAGTATAGGTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTACTTAACAGTTCCAGAG
GGGCAAAAGTGTGGCATGGAGGGGCACGCATGGTGGTTCAAACAGGAGGC
CTGAAGTGGAGAGAGCAGCTGAGAGTGGCATGAGGCTTTGACACTGCAAA
GCCCTCTCCCTGATGTTCTTCCCCCAGCAAGGCCATGGGCTCCCAGACCT
CCTCACACTGAGGACGAAGTGTCCATACACCAGGGCCTATGGGAGACTCT
CAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGACACAAGTTG
GGGAGGAAAGGGCTTATTCTTCTTACACCTCCACCTTGCTGTTCATCACC
AAAGGAAGTCAGGACTGGAACTAAAGCAGGACAAGAAGCAGGAGCTGATG
CAGAAGTCATGGAAGGATGTTACTTACTGGCTTGCTTCCCCTGGCTTGCT
CAGCTTGCTTTCTTATAGAGCCCAGGGATGGCACCACCCACAATGGTCCC
TCCCACCTTGATCACTAATTGAGATCTCATGGAGGCACTTCCCCAACTGA
AGCTCCTTTTTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACACAAAA
CCAGCCAGTACAGGAACATTTCCACCCACAATGGGCCCTACCCCCTTGAT
CACTAATTGAGAAAACGCCTTACAGCTGGAGCTCATGGAGGCATTTCCTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_m16.b1 MSMg01no277_m16.b1 CHROMAT_FILE:
MSMg01no277_m16.b1 PHD_FILE: MSMg01no277_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:59 2005
         (238 letters)



>mm_chr5_151856119_151856756
          Length = 638

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatttatagcaacaagcaagagataccagggcatggcaaccatacacatgtatttctc 60
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 437 ttcatctatagcaacaagcaagagacaccagggcatggcaaccatacacatgtatttctc 378

                                                                       
Query: 61  tgggtatctatgagaaagagaaatgaccactggccactgattactggtctggctactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgggtatctatgagaaagagaaatgaccactggccactgattactggtctggctactcag 318

                                                                       
Query: 121 aaacattccaccttgctcttaaagaagtgagctaatctgtatgccactggggagcgagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaacattccaccttgctcttaaagaagtgagctaatctgtatgccactggggagcgagga 258

                                                                    
Query: 181 gagtggagagcagaaactcaaagtctgggtgtcgagaacatggtgccttgatattga 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagtggagagcagaaactcaaagtctgggtgtcgagaacatggtgccttgatattga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)